K35445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35445

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35445

Determination of introduced cDNA(s)

  • J023095I23 - Rice Full-length cDNAs - Original: J023095I23

    full reading [+] show sequence

    Nucleotide sequence: J023095I23 - full reading
    GACTCCCATG GCGGCAATCG ATCTCTCCTC CCCCGCAAGA TCATCGCCGG 
    CGCCTCTCTC CCCGCGCCGC GGCTCCCTGC ACCTCCTCCT CCGACGCCCG
    CGCCGACCCA CCCTCCGCTG CTCCCTCGAC GCCGCGCCAA AGCAGGCTCA
    GGCTCAGGGC CCGCCCGCGG CGGTCGCGGC GGAGGAGGCG CCCACCGCGC
    GCAAGGAGTG CTATGGCGTC TTCTGCACCA CCTACGACCT CAGGGCGGAT
    GAGAAGACAA AGTCCTGGAA GAGCTTAGTG AATGTTGCTG TGTCGGGTGC
    AGCAGGGATG ATATCAAATC ATCTGCTTTT CAAACTTGCC TCTGGTGAGG
    TTTTTGGACC GGACCAACCA ATAGCACTTA AGTTGTTGGG CTCTGAAAGA
    TCAATACAAG CACTTGAAGG TGTGGCTATG GAATTGGAGG ATTCACTGTA
    TCCATTGCTA AGGGAAGTCA GCATTGGTAT AGACCCTTAT GTAGTCTTCG
    AAGATGCAGA ATGGGCTCTT CTTATTGGGG CTAAGCCCAG AGGTCCTGGA
    ATGGAGCGAT CTGCCTTACT AGATATCAAC GGTCAAATCT TTGCTGAACA
    GGGGAAAGCA CTTAACTCCG TGGCATCTCG GGATGTGAAG GTCATAGTTG
    TCGGGAACCC CTGTAACACT AATGCATTGA TTTGCTTAAA GAATGCTCCC
    AACATACCAG CAAAAAACTT TCATGCATTG ACGAGGTTGG ATGAAAATAG
    AGCCAAGTGC CAGCTGGCAC TAAAAGCGGG TGTATTTTAT GACAAAGTAT
    CAAATATGAC TATTTGGGGG AACCACTCAA CAACTCAGGT TCCTGATTTT
    TTGAATGCTA AAATTAACGG GAGACCAGTG AAAGAAGTCA TTAAAGACAC
    AAAGTGGTTA GAAGATGAAT TCACCAAAAC AGTTCAAAAG CGTGGAGGAG
    TACTCATACA AAAATGGGGC AGATCTTCAG CTGCATCAAC CGCCGTTTCC
    ATCGTGGATG CTATTAGGTC CCTTGTAAAT CCTACCCCAG AAGGCGATTG
    GTTCTCTACT GGGGTTTATA CGACTGGAAA TCCTTATGGC ATAGCAGAGG
    ACATCGTGTT CAGTATGCCA TGCAGGTCAA AGGGTGATGG TGACTACGAA
    CTAGTTAAAG ATGTGGCAAT GGACGATTTC CTCTGGGAAC GGATAAAAAA
    GAGTGAAGCT GAATTGCTCG CCGAGAAAAG ATGCGTTGCC CATCTTACTG
    GAGAGGGCAA TGCATTTTGT GGTCTTCCCG GAGACACCAT GCTTCCAGGA
    GAAATGTAGA ATCATTGTTG CGGTAACCCT GGCTTGTGTT ATTTCACAGG
    GGTTTTCGAC GGAAACACAC ACACACAAAC TACTAGTAGC TGAGAGAAAC
    AACTGCTTGC AGATTACTTG CAGCAGTTAT TTATACGTAT GTATAATAAG
    TATTTATTTA ATAAGGATGC CACAGAAATT TCAACTATGT TGCCGAGTTT
    GTACACTATA ATACAATCAA CCAAATGCAA TGCGGCTGAT CGTATAGCAT
    ATACTTCTGG ATTTTCCCAG TTTTGCG

    Gene models with high sequence identity

    1. AT5G58330.2 [+] show detail - lactate/malate dehydrogenase family protein
      E-value: 0; Score: 649.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Malate dehydrogenase, active site 0
    superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 9.8e-55
    superfamily NAD(P)-binding domain 2.3e-41
    HMMTigr Malate dehydrogenase, NADP-dependent, plants 2.3e-281
    HMMTigr Malate dehydrogenase, NAD/NADP 3.3e-226
    Gene3D NAD(P)-binding domain 2.8e-45
    Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 1.6e-60
    HMMPfam Lactate/malate dehydrogenase, C-terminal 6.4e-44
    HMMPfam Lactate/malate dehydrogenase, N-terminal 2.1e-34
    HMMPanther Malate dehydrogenase, NAD/NADP 4.2e-117

    See the detailed result >

    AT5G58330.2

    Model type
    Protein coding
    Short Description
    lactate/malate dehydrogenase family protein
    Computational Description
    lactate/malate dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, malate dehydrogenase activity, binding, catalytic activity, malate dehydrogenase (NADP+) activity; INVOLVED IN: oxidation reduction, malate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding domain (InterPro:IPR016040), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G56720.1); Has 9958 Blast hits to 9954 proteins in 2609 species: Archae - 125; Bacteria - 6277; Metazoa - 781; Fungi - 166; Plants - 567; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR