K35504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35504

Determination of introduced cDNA(s)

  • J013075G07 - Rice Full-length cDNAs - Original: J013075G07

    full reading [+] show sequence

    Nucleotide sequence: J013075G07 - full reading
    GAGCGTGCTC GGGGTCGCGG CGGCTAACCG TCTCTCTCGC CGCCGTCTCG 
    CACCTCGCGT CGCCGCCGCC GCCGCGAGTG TCGGAGCGGA GGAGAAGGGG
    AGGGGGGCCA TGGCGAAGGG CGACGACGCG CTGGCGCGGA AGCGCAACAA
    GGTGCGGCGG AAGCGGATGC GCAGCAGCGA GAACGCCGTG TCGGCCCGCG
    TCGCCGGCAT CATCGCCTCC AAGCGCCGCC GCAAGTCCGG CAAGCGGCGG
    GCCTGCGAGG GCATGTGCTT CTCCCTCCCC ACCCCGGAGG ACCCCTTCAA
    CGACCGCCAC GGCAAGAAGC GGAAGGGCGA CGACGAGCCG ACCGGAGACG
    CCCCCGCCGC CGCCGCCGCA GGCAGGGACG AATCCAAGAA GAAGAAGAAG
    AAGAAGAAGA AGAAGGATTC GAGCGCCAAG AAGCAGCCGG CGAGGGAGGC
    CGCCGCCGCC GCCGCCGCGA ACGCCAAGTC TAGGGAGAAG GACGGGGCGG
    AGTACGACCG GCCGTCCAAG TTCCTGGTGG TCTGCCTCAA CGCCATCCGA
    GACGCGGCGG CGTCCGAGGA CGGCGGCGGC GGCGGCATCC ACGACACCGG
    GTCGTGGGGC GTGGAGCTCT GGAATTGCTG CTCGGCTGCG CCGCCTACGC
    ACGTGCTCGA CACCAGCGGC GAGTGCGCCA CCCGGGAGAA GACGGCTTGG
    CTCGTCTCCA CAGCCTGCGA CATCGTCGCC AGGAAGGAGA AGCTCGCTGT
    GGTCGTCTCT TGCCCCTTCC TACTCTACCT CGTCCCCTCC CAGGAAAAGG
    CCGTGCAAGT GCGTTCGATT TGCAAGCCTC TGAAATCACT TGGTATCCAT
    TCCGTCAGTC TGCATCCCGG CGCTTCCATT GAACACCAGA TTTCTGGATT
    AAAGAGTTGC GAACCGGAGT TCCTTATATC CACGCCAGAG AGGCTGCTTG
    AACTAATAGC TTTAAAGGCG ATTGACATAT CAGGCGTATC GATGCTGGTG
    ATTGATGGTC TGAAGTGTTT CACGGACCTT AATGTCAGCG ACAAGCTTTG
    TTCTATTAGG GATGCCATAT TGAGCAACCC TCAAATAACT ATATTCAGTG
    ACCCGTCTGA CCGAAGGGTA GCTGCACTGG CAACAAAACT AGTCGGTGGA
    AAAAAGATCA CAAGGCTTTG TACGAATGAT TCAGTTACTT CTAGAGGTGC
    ATTCATAACA CAAAAGATAC ACATATGCCC ATCAAAGGAC CAAAAGGCAC
    CGAAGGTGAA GGAAATTCTT GAACAAATTC TAAATGATCA TGCTAGAAAG
    ACTGCAAAGG TCCTACTGGT AACCGCAAGT GATCATGAAG CACAGCATCT
    GTCATCATCC TTGAAATTGC AAAATTGTAC CGTGACCAAT GACTCGCATG
    GCAACTCTTT TACCATATGC AGCAGTGTTG GGCTGATTAA TGTCCTTGTG
    AAAGACTGGG AGAACATAAC AACGGCAAAT TTTGAGGACT TCGACACTGT
    GTTGGTTGCA GACTTGCCTC CTTCAGTTGA CGAATACATT GAAATCCTCG
    CTGGTGCAAG CTGTCATGTG CTTGTGGGGG AGGTGCATTG CATCTTTTCT
    AGCGCTGATG CTCTGCTTGC AAAACCCTTG TCTGAGGTTC TTACAAGCTG
    TGGTCAGGTA GTGCCTGAAT TTCTCAGGAA ACTGGCATCC TCATAGCAGG
    ATCGGTTTTC TCATGGCAAT CATCATATAG TATACGCTAC CATATTCATG
    GTTCTTCCAG TCACTAAACA TTTTTGTCAG TTTACTGTTC CTTATCATGT
    AATTCTCACA GCATAACGAG GATCTTCAGC CTTGTTGTAT CTCTGCAACT
    TTGTATTTTT TGAATGCGAT CAAGTCCTAG TCTGTGAGAA CCAATTGCTT
    TTGCATTCAT TAACATTACA TGGT

    Gene models with high sequence identity

    1. AT2G28600.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 4e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DEAD/DEAH BOX RNA HELICASE-RELATED 2.8e-27
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 2.8e-27
    Gene3D no description 1.5e-13
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    FPrintScan PRICHEXTENSN 9.5e-09
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 9.8e-11
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-12

    See the detailed result >

    AT2G28600.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 18076 Blast hits to 18074 proteins in 2559 species: Archae - 105; Bacteria - 11263; Metazoa - 1996; Fungi - 1558; Plants - 1139; Viruses - 1; Other Eukaryotes - 2014 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR