K35510

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35510

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35510

Determination of introduced cDNA(s)

  • J023047F19 - Rice Full-length cDNAs - Original: J023047F19

    full reading [+] show sequence

    Nucleotide sequence: J023047F19 - full reading 
    GACCATTCGG TCGGCCTTTA CAAATTGCCG GTCGCTTCGC TCGCCGTGCA 
    AACCAAGCCA GCGTCGGGCC AAGCCAACGC CGACCACCGA GGCGACCGGA 
    GAAGCGCGGC GAGGTAGGCC CCGATGGCGG CGGCGGCGGC AGCCGGAGCG 
    GGCGCGGACG AGGAGGTGGA CTTCGAGTTC TTCCCCATCA TCCGCCGCTA 
    CAAGGGCGGC CGCGTCGAGC GGTTCATGAA CATCCCCCCG CTCCCCGCCG 
    GCACCGACCC CGCCACCGGC GTCACGTCCA AGGACGTCGT CGTCGACCCG 
    GCCGTCGGCC TCTGGGCGCG CCTCTTCCTC CCGCCTGGCG GCGGTGCTCC 
    CCAGGGTAAG CTCCCCGTCG TCGTGTACTA CCACGGCGGG GCCTACGTCG 
    TCGGCTCGGC CGCCGACCCG TTCACGCACT CCTACCTCAA CGGCCTCGTC 
    GCCGAGGCTG GAATTCTCGC CGTCGCGCTG GAGTACCGCC TCGCGCCGGA 
    GCACCACCTC CCCGCGGCGT ACGACGACTC GTGGGAGGGG CTCAGGTGGG 
    TGGCCTCCCA CGCGAACGGC GGCGGCGGCG TCGAGCCGTG GCTGCTCGAG 
    CACGGCGACT TCTCCCGCGT GTTCCTGGCG GGCGCCAGCG CCGGCGGCAA 
    CATCGCGCAC TACGTCGCCG CGCGCGCCGG CGAGCACGGC GGCCTCGGGC 
    TCAGCATCAG GGGCCTGCTC GTCGTGCACC CCTACTTCAG CGGCGCGGCG 
    GACATCTGCG CGGAGGGGAC GACGGGGAAG GCGGAGAAGG CCAAGGCCGA 
    CGAGTTCTGG CGGTTCATCT ACCCGGGCTC GCCGGGGCTG GACGACCCGC 
    TGTCCAACCC CTTCTCGGAC GCCGCCGGCG GCATCAGCGC GGCGCGCGTC 
    GCCGCCGACC GCGTGCTGGT CTGCGTCGCC GAGAAGGACT CGCTCCGGGA 
    CAGGGGCGTC TGGTACTACG AGAGCCTCAA GGCCAGCGGC TACGCCGGCG 
    AGGTGGACCT CCTCGAGTCC ATGGGCGAGG GCCACGTCTT CTACTGCATG 
    GATCCGCGCT GCGAGAGAGC GCGGGAGATG CAGGCGCGCA TCCTCAGCTT 
    CCTCCGCAAG TGAAGCTCCT CCACGACGCG AAGGCTTCGC CATGATGGAA 
    TAATTCTGGC GCTTTGTGAT GCCGCCATTG TTGAGCTCGA GGGCTCCTGT 
    AGCTTGTCGC TCGTCAGTTC AGGCATCTTT TGTGCCAATT GACGATCTTA 
    TTCTTCAAGA GTTGGAAATC ATCGAACAAA TTGGAAATTT CTATTCGAAT 
    CATCAATCAG TTATC

    Gene models with high sequence identity

    1. AT1G47480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 2e-53; Score: 207.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 1.5e-55
    HMMPanther CARBOXYLESTERASE-RELATED 3.6e-96
    HMMPanther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES 3.6e-96
    Gene3D no description 1.5e-58
    HMMPfam Abhydrolase_3 1.3e-46

    See the detailed result >

    AT1G47480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 13 (TAIR:AT3G48700.1); Has 8596 Blast hits to 8578 proteins in 1414 species: Archae - 104; Bacteria - 4918; Metazoa - 486; Fungi - 808; Plants - 1365; Viruses - 3; Other Eukaryotes - 912 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR