K35516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35516

Determination of introduced cDNA(s)

  • J023083G14 - Rice Full-length cDNAs - Original: J023083G14

    full reading [+] show sequence

    Nucleotide sequence: J023083G14 - full reading 
    GGCGGCGCGA GAGAGGCCGG CTCGCCGCCG CGCCGCTCCC CGCGGCGGCG 
    TCCAGCCGAG TTAGCACCAT GTGAGTATCC CCCCCCCCCA CCACCACCAC 
    CAGTCCCCAC GTCTCCTCCC TCCACAGCGC CGCACCACCG TCACGCGGTG 
    ATCGCGGTGG GGGCCATCGC TGATTGCTGG AGGCGCCGCG GTCCCGGATT 
    TTCCCAAAGA CCTCCTTCGC AAATTTATGG ATCATGCTTC TTGGAATGAT 
    GATATTAAGC CATGGGTATG GGACTTCCCA CATGCCCTTA GCTCTCAACT 
    TCATCTCAGA AGAGTGTACC CTATCCAAGA ACTCTATGTA TGTTACATCC 
    GTGTGGAATA AGGAGGAAGG CATATATCTA AGTTGAGACA GCAGTGTGTT 
    GACCTCCTGT AAACATATAT ACATACAGAA TTCAACCACT CAAACTTGAC 
    CTCATTTTAC TTGGTTTATA AACATCTTTA GTGACATAAG GGTAATGGTT 
    GGCTCACCTG TTCCATGACA TCAGCCTCGT CAGGGTTGAA GTTCTTTGTC 
    ATCTCAAGGC AGAAGAGCAC TTTTCCATCT GATTCAAACT GGCTAGAACG 
    CACTGGGTCC TGCGGATTGA AGGACGACCT CCAGTTGTTC AGGATGCCTG 
    TCCTATTTAT GATGACAAAG CCCTCGATGT AGTCAAATGT CTTCTCTGCT 
    GAAATGAGCA TTTCCTGGTC TTCGGTGAAG CTTGTGAAAT CCAAGTTCAA 
    GAGGAATCCT GGCTCTTGTG ATGACGCCAA ACTGACCTAG GCCACCAAGG 
    GCAGCATGGA AGAGATCAGA GTTTTGTTCA GCTCGTTGAC ATTGCTGATC 
    TGTGGGCCAT GCCGGAAGGT CTGCCCACTG ACTCCTGCAT TCGACAGTGT 
    GCCTCCAACC GTGAGATGGA GATAGTCCGT CCACGACTTT GGTGCTAAAC 
    CATACTTCAG AGTCTCATGC AAAACATTTA TCCAGAGTTC TCCTCCTGAA 
    GCATCGACAT AGGGTGATAC GCCAGGGTTC ACCCTCATTG TGTTACTCTG 
    GAGGGATTCC ATACTGATGA TGATTCCCTC AGCAGCCTGG GACTGCCCAT 
    ACAGCGAGTG CCCATGTCCA CGGGCTGCCA CTGTGAGCGT GGAGTGCTCA 
    CCCATCAAGA ACACATGCCT GATGGTTGTG GCAATGTCAG CCACTGAGCC 
    AGGATGAAGC ACCGCAACCG GCGGGAAGCT GGACAGGTTG CCAAAGTCCT 
    GTGCAGCAGC AGACACATCG TGGAAGCTGA AATGGCCATC AAGGGTGAGT 
    TCCTCCAGGG ATGATGGCAC ATCTTGTTTA GGCACATGCA TGGTGGTGAC 
    ACCACCAAGG GCAAGTAACA GGAGCAGCTT CAGATACTGC AAGAGTGATG 
    GCCTCATGGC TCTTCTACGT GTCAAGAATG AACAATATTC TGTGGCAATG 
    TTTTGAGAGG AAGACAAAAT GTGCAGGAGG ACAGTTGTTC ACTGCCAAGA 
    GCAGAGGGAT GGGAGTGGAG ATGGAGGGAG AGAAGGAGAT TTAAAGGAAA 
    ACCTTGAAGG GTATGTATGT GGACTGGTGC AGGAAGTGGC GTGGTCAAAC 
    CGGTATTGGG CACTGTTTGG TAGACTAGAA ACCCATGTGA GGATGTGCTG 
    CTTACAAAAT TTGGAAGAAT ACATGTTTCT TTTGGAGGAA GCTATGTTGC 
    GGTGGTTGAT GGCTCTATTT GAGATGCTAA TGTTCTTTCT TCCTTGGCTT 
    CTGTTTCAAG CATGGTGCAG CATCTGTCAG TAAGTGATTG GATGCAGGGA 
    AAAAATGATG CATTCGTTTA GTAAACTCAG TCTATCACAG TACATATCTT 
    TCACTACAGC TTGTTCAGAG GAACAGTGAC ATAGAAGAGA TCAAGCAGGT 
    GCAGTGAACA GAGATGGGTT TTGAGCGTGT ATCTGGTGTG GATCTCAGAA 
    GGATTGAGAT TCTGATGAAG TCATATGTAG GGAAAAAGAA GTGATATCAG 
    GTATTCAAGT GGCAAACCTG GTTGCTCCTG AGCAGGCCTG CTTGATCCCT 
    CAAATTCGAT TTCTCATGCA AAAATTCATG TTGGTCTTTG CGAGGATGAG 
    CCAAAGTGCT ATCTCTGTGC TTTCATATTT ACAAGTGGCA AGCCTCCTCT 
    CAAGCATATC TGATTAAGTT TCTTCCCATA TTTCTTTTTC GGATGTTGGG 
    GCCTGTTTTC CAACTGCATG AAGATCAATT TCTTGCAGAA CATATAAACA 
    GAAATGTAGC TGATGCCATG CCTGCATACC ACCCATGAGT GGCATACCTA 
    ATATCAATAT CAAGGAATGA CTTCCTGTAG TGCTCTTCTT CCTTGAGAGC 
    ACACGCAATA AGCTATCAAA AGAGTATACA TCTTTTCCAA GAAAACGAAA 
    GGGAATGACA GAGAATTGCC ACTCTCTAAC CCAAGAAATA TCACACAAGC 
    CTCAATAGAA CCACAGGTGT ACGGGACAAG CATGTGCCAC CGGAACTCCA 
    TTCGCTTGCG TACTTGCACG GGTAGACGGG TGATCAAGTT TCTGGGCAAC 
    GTTACGCGTG ACTACTCCTA TTCATCTTTG CCTTCACCAA CGTGTCAACG 
    GAGAACACTG AAGACAACGA GGTGAACGGA AACGACAACA ACACTGGAGA 
    CAAGGAGGTA AACGGGAACG ACGTCGACGG AGAACACTGG AGAGGAGGTG 
    AACGGGAACG ACAACACTGG AGACGTGAAC GGAAACGACA ACACCAACAG 
    AGACAATACT GCCTCAAACT CCAGCGGCGG AGTGCCATTC TTATGATGCT 
    CCAATTTATC AACTGCACTA ATTCATACCC TAATTTATCA ATTGCACTAG 
    TTTATATCCT ATATGCGTTT ATATCCTATA TGCGTCATGT TTATTGTCTT 
    AATATTTTAG ATTAAAATAT GTCAAATTAT GACTAAATTT CC

    Gene models with high sequence identity

    1. AT3G63440.1 [+] show detail - cytokinin oxidase/dehydrogenase 6
      E-value: 4e-105; Score: 97.40

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Oxygen oxidoreductase covalent FAD-binding site 0
    superfamily FAD-binding, type 2 6.2e-19
    superfamily FAD-linked oxidase-like, C-terminal 2.6e-07
    superfamily FAD-linked oxidase-like, C-terminal 2.6e-22
    HMMPfam FAD linked oxidase, N-terminal 3.5e-15
    HMMPfam Cytokinin dehydrogenase 1, FAD/cytokinin binding domain 2.1e-22
    HMMPfam Cytokinin dehydrogenase 1, FAD/cytokinin binding domain 5.8e-28

    See the detailed result >

    AT3G63440.1

    Model type
    Protein coding
    Short Description
    cytokinin oxidase/dehydrogenase 6
    Curator Summary
    This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
    Computational Description
    cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR