K35516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35516

Determination of introduced cDNA(s)

  • J023083G14 - Rice Full-length cDNAs - Original: J023083G14

    full reading [+] show sequence

    Nucleotide sequence: J023083G14 - full reading
    GGCGGCGCGA GAGAGGCCGG CTCGCCGCCG CGCCGCTCCC CGCGGCGGCG 
    TCCAGCCGAG TTAGCACCAT GTGAGTATCC CCCCCCCCCA CCACCACCAC
    CAGTCCCCAC GTCTCCTCCC TCCACAGCGC CGCACCACCG TCACGCGGTG
    ATCGCGGTGG GGGCCATCGC TGATTGCTGG AGGCGCCGCG GTCCCGGATT
    TTCCCAAAGA CCTCCTTCGC AAATTTATGG ATCATGCTTC TTGGAATGAT
    GATATTAAGC CATGGGTATG GGACTTCCCA CATGCCCTTA GCTCTCAACT
    TCATCTCAGA AGAGTGTACC CTATCCAAGA ACTCTATGTA TGTTACATCC
    GTGTGGAATA AGGAGGAAGG CATATATCTA AGTTGAGACA GCAGTGTGTT
    GACCTCCTGT AAACATATAT ACATACAGAA TTCAACCACT CAAACTTGAC
    CTCATTTTAC TTGGTTTATA AACATCTTTA GTGACATAAG GGTAATGGTT
    GGCTCACCTG TTCCATGACA TCAGCCTCGT CAGGGTTGAA GTTCTTTGTC
    ATCTCAAGGC AGAAGAGCAC TTTTCCATCT GATTCAAACT GGCTAGAACG
    CACTGGGTCC TGCGGATTGA AGGACGACCT CCAGTTGTTC AGGATGCCTG
    TCCTATTTAT GATGACAAAG CCCTCGATGT AGTCAAATGT CTTCTCTGCT
    GAAATGAGCA TTTCCTGGTC TTCGGTGAAG CTTGTGAAAT CCAAGTTCAA
    GAGGAATCCT GGCTCTTGTG ATGACGCCAA ACTGACCTAG GCCACCAAGG
    GCAGCATGGA AGAGATCAGA GTTTTGTTCA GCTCGTTGAC ATTGCTGATC
    TGTGGGCCAT GCCGGAAGGT CTGCCCACTG ACTCCTGCAT TCGACAGTGT
    GCCTCCAACC GTGAGATGGA GATAGTCCGT CCACGACTTT GGTGCTAAAC
    CATACTTCAG AGTCTCATGC AAAACATTTA TCCAGAGTTC TCCTCCTGAA
    GCATCGACAT AGGGTGATAC GCCAGGGTTC ACCCTCATTG TGTTACTCTG
    GAGGGATTCC ATACTGATGA TGATTCCCTC AGCAGCCTGG GACTGCCCAT
    ACAGCGAGTG CCCATGTCCA CGGGCTGCCA CTGTGAGCGT GGAGTGCTCA
    CCCATCAAGA ACACATGCCT GATGGTTGTG GCAATGTCAG CCACTGAGCC
    AGGATGAAGC ACCGCAACCG GCGGGAAGCT GGACAGGTTG CCAAAGTCCT
    GTGCAGCAGC AGACACATCG TGGAAGCTGA AATGGCCATC AAGGGTGAGT
    TCCTCCAGGG ATGATGGCAC ATCTTGTTTA GGCACATGCA TGGTGGTGAC
    ACCACCAAGG GCAAGTAACA GGAGCAGCTT CAGATACTGC AAGAGTGATG
    GCCTCATGGC TCTTCTACGT GTCAAGAATG AACAATATTC TGTGGCAATG
    TTTTGAGAGG AAGACAAAAT GTGCAGGAGG ACAGTTGTTC ACTGCCAAGA
    GCAGAGGGAT GGGAGTGGAG ATGGAGGGAG AGAAGGAGAT TTAAAGGAAA
    ACCTTGAAGG GTATGTATGT GGACTGGTGC AGGAAGTGGC GTGGTCAAAC
    CGGTATTGGG CACTGTTTGG TAGACTAGAA ACCCATGTGA GGATGTGCTG
    CTTACAAAAT TTGGAAGAAT ACATGTTTCT TTTGGAGGAA GCTATGTTGC
    GGTGGTTGAT GGCTCTATTT GAGATGCTAA TGTTCTTTCT TCCTTGGCTT
    CTGTTTCAAG CATGGTGCAG CATCTGTCAG TAAGTGATTG GATGCAGGGA
    AAAAATGATG CATTCGTTTA GTAAACTCAG TCTATCACAG TACATATCTT
    TCACTACAGC TTGTTCAGAG GAACAGTGAC ATAGAAGAGA TCAAGCAGGT
    GCAGTGAACA GAGATGGGTT TTGAGCGTGT ATCTGGTGTG GATCTCAGAA
    GGATTGAGAT TCTGATGAAG TCATATGTAG GGAAAAAGAA GTGATATCAG
    GTATTCAAGT GGCAAACCTG GTTGCTCCTG AGCAGGCCTG CTTGATCCCT
    CAAATTCGAT TTCTCATGCA AAAATTCATG TTGGTCTTTG CGAGGATGAG
    CCAAAGTGCT ATCTCTGTGC TTTCATATTT ACAAGTGGCA AGCCTCCTCT
    CAAGCATATC TGATTAAGTT TCTTCCCATA TTTCTTTTTC GGATGTTGGG
    GCCTGTTTTC CAACTGCATG AAGATCAATT TCTTGCAGAA CATATAAACA
    GAAATGTAGC TGATGCCATG CCTGCATACC ACCCATGAGT GGCATACCTA
    ATATCAATAT CAAGGAATGA CTTCCTGTAG TGCTCTTCTT CCTTGAGAGC
    ACACGCAATA AGCTATCAAA AGAGTATACA TCTTTTCCAA GAAAACGAAA
    GGGAATGACA GAGAATTGCC ACTCTCTAAC CCAAGAAATA TCACACAAGC
    CTCAATAGAA CCACAGGTGT ACGGGACAAG CATGTGCCAC CGGAACTCCA
    TTCGCTTGCG TACTTGCACG GGTAGACGGG TGATCAAGTT TCTGGGCAAC
    GTTACGCGTG ACTACTCCTA TTCATCTTTG CCTTCACCAA CGTGTCAACG
    GAGAACACTG AAGACAACGA GGTGAACGGA AACGACAACA ACACTGGAGA
    CAAGGAGGTA AACGGGAACG ACGTCGACGG AGAACACTGG AGAGGAGGTG
    AACGGGAACG ACAACACTGG AGACGTGAAC GGAAACGACA ACACCAACAG
    AGACAATACT GCCTCAAACT CCAGCGGCGG AGTGCCATTC TTATGATGCT
    CCAATTTATC AACTGCACTA ATTCATACCC TAATTTATCA ATTGCACTAG
    TTTATATCCT ATATGCGTTT ATATCCTATA TGCGTCATGT TTATTGTCTT
    AATATTTTAG ATTAAAATAT GTCAAATTAT GACTAAATTT CC

    Gene models with high sequence identity

    1. AT3G63440.1 [+] show detail - cytokinin oxidase/dehydrogenase 6
      E-value: 4e-105; Score: 97.40

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Oxygen oxidoreductase covalent FAD-binding site 0
    superfamily FAD-binding, type 2 6.2e-19
    superfamily FAD-linked oxidase-like, C-terminal 0.00000026
    superfamily FAD-linked oxidase-like, C-terminal 2.6e-22
    HMMPfam FAD linked oxidase, N-terminal 0.0000000000000035
    HMMPfam Cytokinin dehydrogenase 1, FAD/cytokinin binding domain 2.1e-22
    HMMPfam Cytokinin dehydrogenase 1, FAD/cytokinin binding domain 5.8e-28

    See the detailed result >

    AT3G63440.1

    Model type
    Protein coding
    Short Description
    cytokinin oxidase/dehydrogenase 6
    Curator Summary
    This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
    Computational Description
    cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR