K35525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35525

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35525

Determination of introduced cDNA(s)

  • J023036K08 - Rice Full-length cDNAs - Original: J023036K08

    full reading [+] show sequence

    Nucleotide sequence: J023036K08 - full reading 
    GATGTGGAGT GGACAAGGAA ATGGGCATTG ACTTCCACGC CCACCTTGTT 
    GCCTCCGCTG CGGCGTCGTT GCCTCGCCTC CCCCACCAAT CGGATCGGCG 
    CGTCGCCTAT AAAATTTCCT CCCAACTCCT AACTGCCCAC TCCGATTTGA 
    CGCCATCTGC TCGTCTGCCT CCTCCCCGAT TTCCTCTCCT CTCTCTCTCT 
    CCCTCTCTCC ATCCCTCCCG GCGTCCAATC TGTTCTGCTT CTCGCTGCGC 
    CCCCGGAATT GTGGTGAGGT TTTGTGAGGG TGTGGGGGAG GAGGAGGATG 
    GCGGAGGAGG TGTATGTCGC GTCGATCGAC CAGGGCACGA CGAGCACGCG 
    GTTCATCGTC TACGACCGCC ACGCCAAGCC CGTCGCGTCG CATCAGCTCG 
    AGTTCAAGCA GCACTACCCG GAGGCTGGAT GGGTTGAGCA TGATCCTATG 
    GAGATTATGG AGAGTGTGAA GATATGCATG GCGAAGGCAC CTGACAAAGC 
    TGCAGCTGAT GGTCATAATA TGGATGTTGG ACTGAAGGCC ATTGGTATTA 
    CAAATCAGAG GGAAACCACT GTTATGTGGA GCAAATCCAC AGGCCTTCCT 
    CTATACAATG CCATTGTATG GATGGATGCT CGCACAAGCC CCATTTGCAG 
    GAGATTGGAA AGTGATCTTT CTGGTGGTAG AACCCACTTT GTCGAGACAT 
    GTGGATTGCC AATCAGTACC TATTTCAGTG CTTTGAAGGT GTTATGGTTG 
    ATCGAAAATG TGGATGCCGT CAAGAATGCA GTCCGAGCTG GTGATGCCTT 
    ATTTGGCACA ATTGACACCT GGTTAATCTG GAACCTCACA GGAGGCATTG 
    GCGGGACAGA TCGTGATGGA AATAAAGTAT TTGGGCACCA TGTCACAGAC 
    TGCTCCAATG CATCTCGCAC AATGCTTATG AACCTGAAGG CACTTGACTG 
    GGACAAACCA ACACTTGAGA CGTTAGGAAT TCCTGCTGAG ATATTGCCCA 
    AAATTATCAG TAACTCGGAG AGAATTGGTG TGGTTGCCAA TGGGTTTCCC 
    TTGGCGGGCG TCCCTATTGC TGGGTGCCTA GGAGACCAGC ATGCTGCAAT 
    GCTTGGGCAG CTGTGCCAGA AAGGTGAAGC CAAAAGCACC TACGGAACTG 
    GTGCCTTCAT TCTTCTCAAC ACAGGGGAGG AGCCTACCCA ATCCTCCCAT 
    GGTCTTCTTA GCACGATTGC TTATAAGCTT GGCCCAAGCG CACCCACTAA 
    TTATGCTCTA GAAGGCTCCA TCGCAATTGC TGGTGCCGCA GTTCAGTGGT 
    TGAGAGACAG CCTTGGAATC ATTAGCACAG CAGCTGATAT TGAAAAGTTG 
    GCTGATACTG TGCAGGATTC AGGTGGAATA TACTTTGTTC CAGCATTCAA 
    TGGGTTGTTT GCACCATGGT GGAGGGATGA TGCAAGAGGC ATATGTATAG 
    GAATCACACG GTTCACTAAC AAGGGGCACA TTGCTCGAGC AGTGCTCGAG 
    AGTATGTGCT TTCAGGTGAA TGATGTCCTC AGCTCCATGC ACAAGGATGC 
    TGGGGAGGCA GGAGAAGTGA AGAGTGCAGA AGGGGAGTTC CTGCTGCGCG 
    TTGATGGTGG TGCTACTGTC AACAATCTTC TCATGCAGAT CCAGGCTGAT 
    TTATTGGGTA GCCCTGTTGT CAGACCTGCT GACATCGAGA CAACTGCCCT 
    TGGAGCTGCG TATGCAGCTG GATTAGCTGT TGGAGTCTGG TCGAAGGAAC 
    AAATTTTCGC TGGTTTGCAC AAGGAGAACA CCAGAGTCTT CCGCCCGAAA 
    TTGGATGAGG CCCACAGGAG GAAGAGAGCA GACTCCTGGT ACAAGGCCGT 
    TTCAAGATCA TTTGATTTGG CTGACCTTTC TCTTTAGAAT GACGAGGGAT 
    TTGTGAATTA CTTCTGGATT GTATAAGGTG CTTAGCACTT GTTATGTCCA 
    TGAATAAGTT GGTCAATGGA ACATCCTTCA AAAGAATTAG TTG

    Gene models with high sequence identity

    1. AT1G80460.1 [+] show detail - Actin-like ATPase superfamily protein
      E-value: 0; Score: 789.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Carbohydrate kinase, FGGY, N-terminal 1.9e-66
    HMMPfam Carbohydrate kinase, FGGY, C-terminal 1.4e-58
    PatternScan Carbohydrate kinase, FGGY, conserved site 0
    HMMTigr Glycerol kinase 0
    HMMPanther Glycerol kinase 1.8e-221
    HMMPanther Carbohydrate kinase, FGGY 1.8e-221
    superfamily Actin-like ATPase domain 9.6e-78
    superfamily Actin-like ATPase domain 7.6e-71

    See the detailed result >

    AT1G80460.1

    Model type
    Protein coding
    Short Description
    Actin-like ATPase superfamily protein
    Curator Summary
    Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.
    Computational Description
    nonhost resistance to P. s. phaseolicola 1 (NHO1); CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 17039 Blast hits to 17024 proteins in 2439 species: Archae - 160; Bacteria - 12245; Metazoa - 663; Fungi - 209; Plants - 115; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR