K35530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35530

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35530

Determination of introduced cDNA(s)

  • J013030L21 - Rice Full-length cDNAs - Original: J013030L21

    full reading [+] show sequence

    Nucleotide sequence: J013030L21 - full reading 
    GCGGAATTAT CATCGCCTGA AGAGCAATTC AAGAGGAGAG GAGAGGAGAG 
    CTAGCTAAGG CAGCCATGGA TTACTGCAAG CAGCAGGAGC GAGACGGGCA 
    CCGCGACGAT GGCGATGTGA CGGAGTGGAA GAAGGTGGCC GAGCTGAGAG 
    CCGTCGTCGA AGCCCAGGAC CCTGCATGCA AGGAGGAGGA CGACTACCAG 
    CTGCGCCGGT TCCTGCGCGC GAGAGACCAC AACATCGGCA AGGCGTCGGC 
    GATGCTGGTG AAGTACCTGC AGTGGAAGCG CGAGGTGAAG CCCGGCGGCC 
    GCGCCATCGC CGACGAGGAG GTGCGCGGCG AGCTGGCGCA GGAGAAGCTC 
    TACATGCAGG GCTACGACCG GCAGGGGCGC CCCCTGGTGT ACGGCTTCGG 
    CGCCCGCCAC TTCCCGGCGC GCCGCGACCT CGACGAGTTC AAGCGCTACG 
    TCGTCTACGT CCTCGACCGC ACCTGCGCCC GCCTCGGCGG CAATGGCGGG 
    CAGGAGAAGT TCGCCGCCGT GGCCGACCTG CAGGGGTGGG GGTACTACGG 
    CAACTGCGAC ATCCGCGCGT ACGTGGCGGC GCTGGAGATC ATGCAGAACT 
    ACTACCCGGA GAGGCTGGGG AGGGTGTTCT TGATCCATGT CCCCTACGTG 
    TTCATGGCGG CCTGGAAGAT CATCTACCCC TTCATCGACG ACAACACCAA 
    GAAGAAGTTC GTCTTCGTCG CCGACAAGGA CCTCCACGCC ACGCTCCGCG 
    ACGCCATCGA CGACTCCAAC CTCGCCGAGG ACTACGGCGG CAAGCTCAAG 
    CTCGTCTCGC CCCTTATTAA TGGCGCCACC GAATCCAATC GCCGCCGGTA 
    GATAGCTCTC GCGTCGCGTG CATGAAGATC GATATGATGT ATGTACACCC 
    ATCTCGAGAT CCAATTTAAT GGTATGTATG TAGCACGTGT ACGGTGTACG 
    TGAATGTATG TTACTAGTAT GTATACGGGA CAGGAGGACA CTACGAATTC 
    GAGGACGTAC GTGCGTGCTA TATACATTGA ATTACGGCTC TGAACAGTAC 
    TGATCATGAA TGGTCACTGT TGATGAGAAA TGCAAGTTCG TCTGCATCG

    Gene models with high sequence identity

    1. AT1G01630.1 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
      E-value: 2e-68; Score: 256.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 1.5e-28
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 1.8e-07
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 4.2e-41
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 1.5e-16
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 1.1e-40
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 19.65
    Gene3D no description 1.3e-11
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 9e-38
    HMMPanther ASPARTATE SEMIALDEHYDE DEHYDROGENASE 1.5e-106
    HMMPanther RETINALDEHYDE BINDING PROTEIN-RELATED 1.5e-106

    See the detailed result >

    AT1G01630.1

    Model type
    Protein coding
    Short Description
    Sec14p-like phosphatidylinositol transfer family protein
    Computational Description
    Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR