K35531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35531

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35531

Determination of introduced cDNA(s)

J023067C07 - Rice Full-length cDNAs - Original: J023067C07

full reading [+] show sequence

GAGAAGCAGA GATGGAGAGG AAGCGTGTGC TCGTCGTCGG GGGCAGCGGC 
TACCTGGGCC AGCACCTCCT CGCCGCGCTC GCTGCCGGCG GCGAGGTCGA 
CGTCGCCTTC ACCCACCACC GCGACACCCC GCCGCAGCCG CTCCTGCACG 
CGCTCCCCGG GCTTCGCGCC TTCAGAGTAG ACCTCCGCTC CGGCGATGGC 
CTCCGCGCCG TCTCCGAGTC CTTCGGCCAG CCGCATGTGA TTGTGAACTG 
TGCTGCAATC TCGGTACCTC GGCAATGCGA AACGGATCCT GCTGCTGCTA 
TGGCTACTAA TGTACCTTCA TCACTTGTCA CTTGGTTGTT AAGCTTTGGG 
AATGACAACA CTCTTCTTAT CCATCTCTCA ACAGATCAAG TTTACGAGGG 
AGTAAAATCC TTCTACAAAG AGGATGATGA GACCTTGCCA GTGAACATGT 
ACGGAAAATC TAAAGTTGCT GCAGAGAAGT TTATTATTGA ACAATGCTCA 
AACTATGCAA TCTTGAGAAG CAGTATTATT TATGGGCCAC AAACAATTTC 
TCCTGTGGCA AAATCTCTTC CAATTCAGTG GATGGATAGT GTTCTTTCAC 
AAGGCCAACA AGTTCAATTC TTTAATGATG AGTTCCGGTG TCCTGTTTAT 
GTAAAAGATA TGGTGGATGT AGTGTTGTCT TTGACAAAAT CATGGTTAGC 
AGATGGTAAA GCTGTTCAAG TACTCCTGAA TGTCGGTGGA CCAGATAGAG 
TCTCAAGACT GCAGATGGCT GAATCTGTTG CTGATGTTCG TGGATATAGT 
CATTCTATAA TCAAATCTGT ATCTGCTTCA TCGGTTGACC GGGGTGTAGC 
TTCTCCACCA GACATATCCA TGGATATCAC CAAACTAACC CAAATGCTTG 
GTATCAAGCC AATTTCATTT CAAGATGGAG TCAGAGCTAC ACTTGCTGCA 
GAAGCTAGTA CATGACACTT TGTCTGTTCA TTTTGCCAAG AGAGCTGCTT 
GGATTTGTCT GTGAAAGTAT GTGAGATAAA GAGCCACTTT CAGTTTGTTG 
AACAGTGGCA AATCTGTGTT GAGTATATGT GAAAGATGTA ACTTTTCGAC 
GGTGTGAAAA AGGAAATTTT GCGTTCACCC GACATCAATA TCATGTATTA 
CTGTCTGGTT TTATACTTCC GAATAAAATC ATCATTCATT TTGT

Gene models with high sequence identity

AT4G00560.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 5e-97; Score: 351.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	DTDP-DEHYDRORHAMNOSE DEHYDROGENASE	1.6e-51
Gene3D	NAD(P)-binding domain	5e-43
superfamily	NAD(P)-binding domain	5.5e-57
HMMPfam	dTDP-4-dehydrorhamnose reductase	1.8e-45

See the detailed result >

AT4G00560.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 7761 Blast hits to 7761 proteins in 1842 species: Archae - 350; Bacteria - 5037; Metazoa - 116; Fungi - 124; Plants - 45; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Link: InterPro Scan - TAIR