K35547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35547

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35547

Determination of introduced cDNA(s)

  • J023105D03 - Rice Full-length cDNAs - Original: J023105D03

    full reading [+] show sequence

    Nucleotide sequence: J023105D03 - full reading
    GGTGCTTCTC CACCTGTTGT TCCATTTTCT CCTCGCTTAT CTCTTCCTCG 
    CTCGCTCTCC CTTTCGCGCA CCAGAAAAGT CGTTTTTTAA TTTTCGAGTT
    TCCGTGGAAG ATTCTCGATA CCTGTCCCTC GTCGTCGTCC TCCTCCGCCG
    GCCGCCGCCG ACGACCGCAG CAGGGGTGGA TCCGGGGCGG CGCCGATTCG
    TATCCTGGTA GGATCCCACT GAATTCAACT GTTGAACAAA AAGCCAGGAA
    GGTGGCTGTT CTTGTGGCAC TCAGTGCTAG TGGAAGTGCT CCAGTACTGT
    ACAGGACCAT GGATGCTCTT TGTGATTTCT GCAGGGAGCA AAGGTCAATG
    GTCTATTGCC GATCAGATGC AGCATCCTTG TGCTTGTCGT GTGATCGTAA
    TGTGCATTCA GCCAATGCCC TTTCCCGACG CCATACAAGA ACCCTTCTTT
    GTGATCGTTG TGTTGGACAG CCTGCAGCAG TCCGTTGTCT TGAAGAGAAC
    ACCTCACTTT GCCAAAACTG TGACTGGAAT GGACATGGGG CAGCATCCTC
    AGCTGCTGGG CATAAAAGGC AGACCATAAA CTGTTACTCG GGGTGCCCAT
    CGTCGGCAGA GCTCTCGAGA ATCTGGTCCT TTAGTATGGA TATCCCAACT
    GTAGCTGCGG AGCCAAACTG TGAGGAAGGA ATAAACATGA TGAGCATTAA
    TGACAATGAC GTCAATAACC ATTGTGGTGC TCCAGAAGAT GGCCGCTTGT
    TGGATATAGC TAGCACAGCA CTCATGAGTG ATTTACCTAC AGGAGACAAG
    TTCAAACCTT TAATAGGTTC TTCTTCAGGA GATGGGATGA ATCTTCTGCC
    ACTTAATTCA GATCAGCCAG CTGAGCCAGT TTCAACGACG CCTAAGGCAC
    CCTGTGTCAC AGACAAAGAT ATGTTCAATG ATGGGAGCGT ATATGGAGAC
    TTCTGTGTGG ATGATGCTGA CCTAACATTT GAGAATTATG AAGAATTATT
    CGGTACCTCT CACGTTCAAA CAGAACAACT CTTTGATGAT GCTGGAATTG
    ACAGTTATTT TGAAATGAAG GATGTGCCAG CAGATGAATC TAATGAGCAG
    CCCAAACCTG TGCAGCCAGA ATGTAGCAAT GTCGCATCTG TTGATTCTGG
    GATGTCAAAC CCAGCTGCAA GGGCTGATTC CAGCCATTGT ATTCCTGGTA
    GGCAGGCTAT ATCCAACATA TCCCTTTCCT TCTCTGGTTT GACTGGTGAA
    AGCAGTGCTG GATATTTTCA AGATTGTGGG GTATCGTCAA TGATCCTTAT
    GGGTGAGCCA CCCTGGCATC CTCCTGGTCC TGAAAGTTCA TCTGCTGGAG
    GCAGCAGAGA TAATGCTCTT ACACGGTACA AGGAGAAGAA GAAGAGAAGA
    AAATTTGACA AGAAGATAAG GTATGCTTCT CGTAAGGCTA GGGCAGATGT
    GAGAAAAAGG GTCAAAGGAC GGTTTGTAAA GGCTGGCGAA GCATATGACT
    ACGATCCGCT GAGCCAAACA AGAAGCTACT AAAGCCTTTC ACTCGATTGG
    TTTCGTCCAG TGTTCAAGTA GCAATTTTCA GCAGCTGATT TGATGTTGGT
    TGCACGGCAA GCATGATCAC TGGAGAACAC AAGCAATTGC GGCAGACCTT
    GCAATTGAAA ACGGGGAAAG GAAACCAAAC GCTGTGATCA AATCAAATTA
    ATGAAATAAA AAAGGAAAAA ATAGGATGCA AACATGCGAG AAGCTCATGG
    ATGGTAATGC TCCATTTTCT CCTGTACAGT TCATGCATCT TCAGTTGCTT
    CTGGTTGAGA TGTCTGAATC ACTCTCTACC ATCTGTGCAT TAATCAAATA
    CAAATACATG GGCCTACCGC ACGACGACGA ACGCACCTGC TTCTGTTGTG
    ATGTTTTGTG TTGCGGCTGT CAGGCTGGAT CTCTAGGTAA CATGATTAAT
    TATACTACTG ATGGAATTTG CACCGCTGTA ATATTATTTA CGAATCACAA
    TCTGCCGTGG GATTGTTCTT CTGT

    Gene models with high sequence identity

    1. AT3G07650.4 [+] show detail - CONSTANS-like 9
      E-value: 2e-76; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, B-box 7.3e-12
    HMMSmart Zinc finger, B-box 0.24
    HMMPfam CCT domain 6e-18
    ProfileScan Zinc finger, B-box 10.281
    ProfileScan Zinc finger, B-box 9.058
    ProfileScan CCT domain 15.408

    See the detailed result >

    AT3G07650.4

    Model type
    Protein coding
    Short Description
    CONSTANS-like 9
    Curator Summary
    This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
    Computational Description
    CONSTANS-like 9 (COL9); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G48250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR