K35547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35547

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35547

Determination of introduced cDNA(s)

  • J023105D03 - Rice Full-length cDNAs - Original: J023105D03

    full reading [+] show sequence

    Nucleotide sequence: J023105D03 - full reading 
    GGTGCTTCTC CACCTGTTGT TCCATTTTCT CCTCGCTTAT CTCTTCCTCG 
    CTCGCTCTCC CTTTCGCGCA CCAGAAAAGT CGTTTTTTAA TTTTCGAGTT 
    TCCGTGGAAG ATTCTCGATA CCTGTCCCTC GTCGTCGTCC TCCTCCGCCG 
    GCCGCCGCCG ACGACCGCAG CAGGGGTGGA TCCGGGGCGG CGCCGATTCG 
    TATCCTGGTA GGATCCCACT GAATTCAACT GTTGAACAAA AAGCCAGGAA 
    GGTGGCTGTT CTTGTGGCAC TCAGTGCTAG TGGAAGTGCT CCAGTACTGT 
    ACAGGACCAT GGATGCTCTT TGTGATTTCT GCAGGGAGCA AAGGTCAATG 
    GTCTATTGCC GATCAGATGC AGCATCCTTG TGCTTGTCGT GTGATCGTAA 
    TGTGCATTCA GCCAATGCCC TTTCCCGACG CCATACAAGA ACCCTTCTTT 
    GTGATCGTTG TGTTGGACAG CCTGCAGCAG TCCGTTGTCT TGAAGAGAAC 
    ACCTCACTTT GCCAAAACTG TGACTGGAAT GGACATGGGG CAGCATCCTC 
    AGCTGCTGGG CATAAAAGGC AGACCATAAA CTGTTACTCG GGGTGCCCAT 
    CGTCGGCAGA GCTCTCGAGA ATCTGGTCCT TTAGTATGGA TATCCCAACT 
    GTAGCTGCGG AGCCAAACTG TGAGGAAGGA ATAAACATGA TGAGCATTAA 
    TGACAATGAC GTCAATAACC ATTGTGGTGC TCCAGAAGAT GGCCGCTTGT 
    TGGATATAGC TAGCACAGCA CTCATGAGTG ATTTACCTAC AGGAGACAAG 
    TTCAAACCTT TAATAGGTTC TTCTTCAGGA GATGGGATGA ATCTTCTGCC 
    ACTTAATTCA GATCAGCCAG CTGAGCCAGT TTCAACGACG CCTAAGGCAC 
    CCTGTGTCAC AGACAAAGAT ATGTTCAATG ATGGGAGCGT ATATGGAGAC 
    TTCTGTGTGG ATGATGCTGA CCTAACATTT GAGAATTATG AAGAATTATT 
    CGGTACCTCT CACGTTCAAA CAGAACAACT CTTTGATGAT GCTGGAATTG 
    ACAGTTATTT TGAAATGAAG GATGTGCCAG CAGATGAATC TAATGAGCAG 
    CCCAAACCTG TGCAGCCAGA ATGTAGCAAT GTCGCATCTG TTGATTCTGG 
    GATGTCAAAC CCAGCTGCAA GGGCTGATTC CAGCCATTGT ATTCCTGGTA 
    GGCAGGCTAT ATCCAACATA TCCCTTTCCT TCTCTGGTTT GACTGGTGAA 
    AGCAGTGCTG GATATTTTCA AGATTGTGGG GTATCGTCAA TGATCCTTAT 
    GGGTGAGCCA CCCTGGCATC CTCCTGGTCC TGAAAGTTCA TCTGCTGGAG 
    GCAGCAGAGA TAATGCTCTT ACACGGTACA AGGAGAAGAA GAAGAGAAGA 
    AAATTTGACA AGAAGATAAG GTATGCTTCT CGTAAGGCTA GGGCAGATGT 
    GAGAAAAAGG GTCAAAGGAC GGTTTGTAAA GGCTGGCGAA GCATATGACT 
    ACGATCCGCT GAGCCAAACA AGAAGCTACT AAAGCCTTTC ACTCGATTGG 
    TTTCGTCCAG TGTTCAAGTA GCAATTTTCA GCAGCTGATT TGATGTTGGT 
    TGCACGGCAA GCATGATCAC TGGAGAACAC AAGCAATTGC GGCAGACCTT 
    GCAATTGAAA ACGGGGAAAG GAAACCAAAC GCTGTGATCA AATCAAATTA 
    ATGAAATAAA AAAGGAAAAA ATAGGATGCA AACATGCGAG AAGCTCATGG 
    ATGGTAATGC TCCATTTTCT CCTGTACAGT TCATGCATCT TCAGTTGCTT 
    CTGGTTGAGA TGTCTGAATC ACTCTCTACC ATCTGTGCAT TAATCAAATA 
    CAAATACATG GGCCTACCGC ACGACGACGA ACGCACCTGC TTCTGTTGTG 
    ATGTTTTGTG TTGCGGCTGT CAGGCTGGAT CTCTAGGTAA CATGATTAAT 
    TATACTACTG ATGGAATTTG CACCGCTGTA ATATTATTTA CGAATCACAA 
    TCTGCCGTGG GATTGTTCTT CTGT

    Gene models with high sequence identity

    1. AT3G07650.4 [+] show detail - CONSTANS-like 9
      E-value: 2e-76; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, B-box 7.3e-12
    HMMSmart Zinc finger, B-box 0.24
    HMMPfam CCT domain 6e-18
    ProfileScan Zinc finger, B-box 10.281
    ProfileScan Zinc finger, B-box 9.058
    ProfileScan CCT domain 15.408

    See the detailed result >

    AT3G07650.4

    Model type
    Protein coding
    Short Description
    CONSTANS-like 9
    Curator Summary
    This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.
    Computational Description
    CONSTANS-like 9 (COL9); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G48250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR