K35617

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35617

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35617

Determination of introduced cDNA(s)

  • J023131H02 - Rice Full-length cDNAs - Original: J023131H02

    full reading [+] show sequence

    Nucleotide sequence: J023131H02 - full reading 
    GACTGCCCTC GCCGCCGCCG CCGCCGCCGC CATGAGAGGT CGGAGCAGCC 
    GCGGCCATGC CGCCGCGTCG ACGTCGAGCC GGCGTGAGGC CGAGGACGAG 
    GATCCAGCCA CCGCCTCCGA CGAATCGGGC GACGACGAGG AGGTTTCCTC 
    GTCGTCGGGG TCGGAGTCGG AGAGCGACAG TGACGCCGAG CGGGAGCTGG 
    AGCGCGCGCT CGCCGACGTG CCGTTCGGGG AGCTGCAGCG CGCCCGCGCC 
    GACGGGTCGC TCGGCGGCCG CGGGTTTAGT GCCGCCGCCG CCGCGCAGAA 
    GAAGGCTCGC AGGGCGAGCA AGAAAAGGCC GATGGAGATC AGCACCAAAG 
    TGCGGCCACC GAGGTTCAGG GAGATCATTC AGGTTCCGAA GAAGGTTGTC 
    AGGGACCCAA GATTTGAACC TGTATATGGA CCTGTTGACA AAGAAGGGTT 
    CAGGAAAAGA TACAATTTCT TATTTGATGA TGAACTTCCT GCAGAGAAAG 
    AGAAACTACA AAAATCGATT AAGAAATCAA AGGACCCTAA TGCCATTGAA 
    GAAATGAAGA GTCGCATCAC TTGGATTGAT AAACAATTGA GGTCTCATCC 
    TAAGAAGAAC GTTGAGTCAG AGATTCTGCG TGAACATATT AAGAAAGAGA 
    GGGAAGCAAC AAAGACTGGA AAGCGACCAT ATTATCTGAA GAAATCTGAA 
    ATTCGTGAAA GGAAGTTGAT GAACAAGTAC AATGAGCTCA AGGAGGCAGG 
    AAAGCTTGAT GCCTTCATGG AGAAGCGGCG GAGGAAGAAC GCCTCCAAAG 
    ATCATCGCTA CATGCCATAT CGAAGGAATG GAGATGGTGC ATAATGATGT 
    CTCTCAAGCT GCCTTTAGCT TGATTCTTTC ATGATCCACT GGTCCAGCGT 
    CCTGTACAAC CTAGAGCGAA AGCTATCCAT GGACGTTTGA TTTGTAGCTG 
    AAATTTGATT ACTGATAACC ACAAGCTGTT GTAAACTTAA ATCATGGATA 
    AAATATTGTT TTGTTTGCTG CTTTAATTTA TCATTTTCTG GAATCAAAGT 
    GAAAACCAGA TCACAAATTT AGT

    Gene models with high sequence identity

    1. AT1G12650.4 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 4e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Protein of unknown function DUF947 1e-51
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF947 4.1e-47

    See the detailed result >

    AT1G12650.4

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR