K35629

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35629

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35629

Determination of introduced cDNA(s)

  • J013092I17 - Rice Full-length cDNAs - Original: J013092I17

    full reading [+] show sequence

    Nucleotide sequence: J013092I17 - full reading 
    CCAGACCACA CCCCACGCGC TCTCGCCGTT CTAGGGTTTC CGCTCCGATC 
    CCTCCCGGCC GACCAAGGTA ACCACCCTCC TCTCCCTTCC CGATCCCGGC 
    TACTAGCCGG AGGCCTCGAG CCTCCGTCCT CCAATTGCCC CTCGATTTTT 
    TTTTTGTTTT GTCGCCCCCG ATTCTCTCCC GGTATCTCGC TCTCGCCGCG 
    CATTCGAGCT AGATTCGAGC CGAGACCAAT CGCTTCCGCT AGGGTGTGGT 
    TTGCTCTCGT GGGGGGTTGG ATCGGTCAGC GTAGTTCTAC TGCATCTTGT 
    GGTGTAACGA TGGCGTTGTT GATTGGGGCT TGAAAGGATT TTGTGTAGTA 
    GCAACAGCCG CAGCAGCAGC CATGGCCGAC AAGGGACTCT TCGCCAACGA 
    CGGCTCCTTC ATGGAGCGGT TCAAGCAGAT GCAGGAGAAG GAGAAGGAGA 
    AGGCCGCCGC CGCCTCGTCG TCCGCCGCCG CCGCGGCCAA GGCCACCAAC 
    CCCAAGCCGG TTGTCGTCGC CGCCAACACC CCGTCGGCGA GCAAGAGGCC 
    GCTGGAGCTC AAGGGGGGCG AGGTGAAGAA GGCCGGTTCG ATCTCGTCGG 
    GCGCCAAGCT CGCCTTTAGC CTCAAGAAGA ATAAGGTCGC CGTGGCGCCA 
    GTCAAGTTTG CGGCTGACGA TGAGTATGAG GAAGATGTTG GTGCGGACAG 
    GGAGGAGCCT GTGAAGCGGC AGAAGTATGC GCAACCTGAA GCTCCTGCAT 
    CGGTGGCTGC CCTGTCAGGG GTCGTTGGTA ATCATTTATT CACATTTGTT 
    CCTGTAATCG CATTCTTTTC CTGTGACATA GTATCAAATA CTTTTGTTAT 
    ATGTTTGTTG GTTACTATGG GTTATATTAT AGTCCATCTC CAACTGGATT 
    GGAACTTTGG ATTTAATCAT TGGATGTATT TTGATTATAA TGAAAGCACA 
    ATCGAAATAG TAGGTATTCA TCATTATTCA GTATAGCTTC TGTTCATGGT 
    TTAGATTAGC TCATTGAATT TGTTGCAGTC TTTATACAAG CATTTGATAT 
    GTCGTAGGTT TCTGATAAAC TGCTGAACAT GTAACCGGTG ATACTACATA 
    AGTATCCCTT GAGCTGCTGA CTGACTGACA TGGTCTGCCT ATTGTAAAGC 
    TCTCAAGCTC TTATACCAGG ACAATTTACT GTTAAACCAA GGAGCTGTGG 
    ACATAATATA TATGATTCAT GCATATATGA TATACTGTTT AGGTTGTCAA 
    AAATAACATC TGTTCCCAGC ATATGAAATT ACTTGAACTG GTATTGGAAA 
    CAGAAATTTG TGAAGGCTTT GGTTTTTTTT CTTCTGACTG CAGCTTATAG 
    ATTAACTGTA TCGACATTGA TGGGAAGGAT GTTGATTGAA AGAGTTGGAT 
    GCATTACTGC TACAGCAGTA ATTTGCATTC CTTGTTCATG CGCTTGATAT 
    TAATCAGTTA TTTAAGTGAC ATGCAGCCCC ATCACCACCA AATGATATGA 
    CTGTGAAGCA AGTTGCTGAC AAATTAGCAA ATTTTGTTGC CAAAAATGGG 
    AGACAGTTTG AGAATGTCAC GCGTCAAAGG AATCCTGGAG ATACACCATT 
    CAAGTTTCTG TTTGATAAGA ACTGTTCAGA CTACAAATAC TATGAGTTTC 
    GGCTTGCTGA AGAAGAAATG TTACTTGCTC AGTCAAAGGA GGCCCAGGCA 
    TCAAAACATG CTAGCTCAAG CACTCCAAGC TCCAGAGCAC CAAGTGCCCC 
    ACAGAGAAGC TCATTTGAAC AAAAGACTAA TTATCAAACA CCTGCTTCAG 
    CTTTGTATGG GGCATATGAG GGTAGTTCTT CCCAAGGAAG CTCATCTGGC 
    TATGGTGAGC CTCCCAAGGA TCCAGTAGCA TTGATGGAAT TCTACATGAA 
    GAAAGCTGCA CAGGAAGAAC GGAAAAGGCC ACCGAAACAA TCAAAAGATG 
    AAATGCCACC ACCTCCTTCT CTTCAAGCTC CTTCTTCCAA GAAGGGACAT 
    CACATGGGCG ACTTCATTCC TCAAGAAGAA CTTGAAAAGT TTATGGCACG 
    TTGTAACGAT GCTGCTGCAC AAAAAGCTAC CAAAGAAGCT GCAGAGAAGG 
    CTAAGATTCA GGCTGACAAT ATCGGACACA AACTTCTGTC TAAGATGGGA 
    TGGAGGGAAG GTGAGGGTCT TGGCAGTGAG AGAAGTGGAC GTGCAGATCC 
    CATTATGGCT GGAGACGTGA AGAAAGACCA TCTTGGTGTT GGCGCTGTCC 
    AACCTGGTGA GGTCACATCT GAAGATGATA TCTATGAGCA ATACAAGAAG 
    CGAATGATGC TTGGCTACCG TTATAGGCCA AACCCACTGA ACAATCCAAG 
    GAAAGCATAC TACTGATATA ATGGGAGGTC ATCCAAGGGG CGATGTAAGG 
    CACAATTTTG TTACATTTTA GCTAACAGAA CTAACTACTG CCTAGGGATA 
    TCACTAACAG TATTGAAAGT TTTTGTTCAC CAGCAGAGAA GCCAAGAAGT 
    TCATTTATTC AGCATATAAT CTTTGAATGC CAGAGGCTTC CCGGTGTTCT 
    GCAGTAGCTT TGGTTTTACG TAGTGTTACA TCTATGCTAC TTTCAACATG 
    TCATTTGGTG TGTGTTTCCC CTTTTGTTTC ACATGGTGAT GTATTCATGT 
    TGCTATTGAT GAATAATGTA TCTTCATGAT TATTCAACCC ATATTGAACT 
    TATGCC

    Gene models with high sequence identity

    1. AT3G52120.1 [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containin...
      E-value: 6e-86; Score: 316.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart SWAP/Surp 9.2e-17
    HMMSmart D111/G-patch 3.1e-17
    superfamily Surp module (SWAP domain; Pfam 01805) 1.2e-16
    ProfileScan SWAP/Surp 13.698
    ProfileScan D111/G-patch 16.357
    HMMPanther ARGININE/SERINE RICH SPLICING FACTOR SF4/14 4.9e-50
    HMMPfam D111/G-patch 2.5e-15
    HMMPfam SWAP/Surp 1.8e-13

    See the detailed result >

    AT3G52120.1

    Model type
    Protein coding
    Short Description
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
    Computational Description
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 1460 Blast hits to 1340 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 1005; Fungi - 124; Plants - 274; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR