K35631

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35631

Determination of introduced cDNA(s)

J013123D13 - Rice Full-length cDNAs - Original: J013123D13

full reading [+] show sequence

GATTGGAGTA TACCACTGAG CAATTGCAAC CATTCCATTC CATTCGATCC 
ATTCTAGCTA GCTTATCTCC TCCAGCATTT TGGAGAGAGC TCTATCTTTC 
TGCTACTTCG CTTGAGAGAA TTTCCATGTT TTCATCTGCA GCCATGCAGC 
AGCTCAAAGA CGATGGGTCG TCCGCGAGGC AGCTACAGCT GCTCGTCGCC 
GCGCTGTCGA CGGCCGGAGC TGTGGCGGCC GCCGCCGTCG TGCGACGCAG 
GCACGGGAGG AAGGCCGCCG CAGCCGCAGC CGCAGCCGCC GCGGCGCCGC 
CGCCGGTGGT GATGAGGGAA ATGCCGAGGC TGGTGATGGC GGAGTCCGGC 
CGCGTCGAGC ACATCGAGAA GTTCTCTCAC TACGTCGCTA GGCAGATGGG 
GTTTCAGGAC ATAAATGAGT GCCCACAGCT GTGCAAATTA GCAAATAACT 
ACCTCAAGAG GACCAAGAAT TGCATGGATG ACATCGATGA CTTCTTCGCA 
AATATCCTGG ATTCGGAGTC CCTTTATGTC AAGTTCATAG AAGAGTTGGA 
TAAATGCATT CTTGGATATT TTGCGTTCCA TTGGGACCAT GCTACCGCTC 
TTATCAGCCA GGCCTTGACC GTAGACTGTG GCACCGCCAG CAAGAAGAAG 
CTAAGGAACC TCGTGTTGGA AGCTACAAGG AAGCAGAGGT TTGAGCGGGT 
GACGAGGGAC CTGAAGGTGA CGAGGGTGTT CTCGACGCTG GTGGAGGAGA 
TGAAGGCGAT CGGCGTCCCG ACGGCGGCGA TGAACGGCGA CGGCGAGGAG 
GAGCCGCACT GCACCGACGT GATGGCGCCG GTGGCGCACG ACGAGCGGAG 
CCCCGTGCTG CTGCTCATGG GCGGTGGGAT GGGCGCCGGC AAGAGCACCG 
TGCTCAAGGA GATTCTCCAG GAGCCACTGT GGTCCAAGGA CGAGGCGAAT 
GCGGTGGTGG TTGAGGCGGA TGCGTTCAAG GAGACGGACG TGATCTACCG 
TGCCATTAGC TCCATGGGCC ACCACAACGA CATGCTCCAG ACTGCTGAGC 
TGGTGCACCA GTCGTCGACG GACGCGGCGT CGTCGCTGCT GGTGACGGCG 
CTGAACGAGG GTCGTGACGT CATCCTCGAC GGTACCCTCT CCTGGGAGCC 
GTTCGTCCAG CAGACCATCG CCATGGCGCG CGACGTCCAC CGCCGCCGCT 
ACCGCATGGG CCCCGGCTAC AAGGTCGACC CCGACACCGG CGACATCACC 
GAGAACTACT GGGAGCCCGC CGACGCCGAC GCCGCCTCGC CGCCGCCGAC 
CAGGAAGCCT TACCGGATCG AGGTCGCCGG CGTGGTCTGC GACGCGTACC 
TCGCCGTGGC GAGGGGGATC CGGCGCGCCA TCGTGACGGG GCGGGCGGTG 
CGGGTGCGGT CGCAGCTGGT GTCGCACAGG CGGTTCGCCG CCGCGTTCCG 
GCGGTACGCC GGCGCCGTGG ACGGCGCGCG GCTGTACAGC ACCAACACCA 
TGGGCGCGGC GCGGCTGATC GCGCGCAAGG ACGGCGTCGC CGGCAGCCTG 
CTGGTGGAGC CGGCGGAGTT CGCGTGCCTC GACGCGGTGG GCGGCCTCAA 
CGAGAACGCC ACCGGGGTGC ACGACCTCTA CCGCGGCGGC GCCACCGCCT 
GCGGCGCCCG CTCCATCTGG GACGACATGA TCGCCTCGCC GGCGCGCGCC 
GACATCCAGA GGGAGCTCCG GGAGGCCTTC CGCTCCGTGG AGCACGCGCC 
GCCGAACACC AATGGCGCCT AGATATGGTG TGTGTGTGTT CAATATGTTT 
CCCCAGAAAT TAATCATGTG GGGAACTAAA TTTGTTGTTG ATGTGTAAAG 
GGAGTGTATT AATTTGTGGT AAATGGATGT GCTTATTATA TGAACTAGTA 
GGGTGGCCCG CGCAATTGCG CGGCTAGCAT CCATAAAAAA ATATTTAATT 
TTCTCT

Gene models with high sequence identity

AT1G04280.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 3e-136; Score: 482.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	0.00000013
Gene3D	no description	0.00000057
HMMPfam	Zeta toxin	0.0000000000000024

See the detailed result >

AT1G04280.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.2); Has 195 Blast hits to 194 proteins in 47 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 3; Other Eukaryotes - 20 (source: NCBI BLink).
Link: InterPro Scan - TAIR