K35634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35634

Determination of introduced cDNA(s)

  • J023090P12 - Rice Full-length cDNAs - Original: J023090P12

    full reading [+] show sequence

    Nucleotide sequence: J023090P12 - full reading 
    CCCTGCAGTA GAAGAGGAGG CGGCGAGCGA GCGAGACGCC GAGCCGAGCA 
    GCGCCGCGGA GGCGTCGTCG TCTCCGGTGG GTTGCAGGAG GCGAATGCGA 
    TGGGGTCCAA GACGAAGGGG TGCTGCGGGT GGCTGATCGT GGCGCTGGTG 
    GCGTCGCTGG TGGCGACGGC GGCGGTGGTG GCCATCATGA AGAAGAAGGT 
    CGGCGGGGGG AGCGGGCGCA AGCTCAAGCC GCTGCCGGTG CCCGGCCCGC 
    CCGGGGCCAT CGACTCCAAG TACGGCGACG CGCTCGGGGT GGCGCTCCAG 
    TTCTTCCAGG TCCAGAAGGC GGGGAAGCTG GAGAACAACC AGATCCCGTG 
    GAGGGGGGAC TCGGCGCTGG ATGATGGGAA ACCAGCGGGG CTGGATCTTT 
    CCAAGGGAAT GTATGATGCT GGTGATCATA TCAAGTTTAG TTTCCCGATG 
    GCCTTCACGG CAACGGTGCT CTCGTGGTCC ATACTTGAGT ATGGAGATCA 
    GATGAGCGCC ACGAAGCAGC TGGACCCTGC GCTTGATGCT CTCCGATGGA 
    TCACTGATTT CCTCGTCAAT GCGCATCCAT CTGACAATGT GTTCTACATT 
    CAGGTTGGTG ATCCTGATCT AGATCACAAC TGCTGGGAAA GGCCGGAGAC 
    TATGTCTGAG AAAAGACCAC TCACACAGAT TAACACAAAG TCTCCTGGAT 
    CAGATGTTGC TGCTGAGGCA GCAGCAGCTA TGGCATCAGC ATCAATTGTT 
    TTCAAATCCA GAGACACTAC ATATTCTGAT TCACTTCTTC AACATGCTCA 
    GAAGTTGTTT ACTTTTGCTG ATACTTATAA AGGCCTCGCC AGTGACACCT 
    ATCCAAAGCT CCAAAACTAC TATAATTCTA CTGGTTATCA AGACGAACTC 
    CTGTGGGCAG CGAGTTGGCT CTATCATGCT ACAGGAGACC AAACATACCT 
    CAGTTATGTG ACTGTAGAGA ATGGAAAAGC TTTTGCTGAT TGGGGAAGGC 
    CAACATGGTT CAGTTGGGAT GACAAACTTG CAGGGACACA GGTGCTCTTG 
    TCAAGATTAA ATTTCTTTGG ATCCAAACAG ACATCTAATG CTGAAAACAT 
    GGGACTCAAA ATGTACAGAG ACACTGCTGA AGCCGTCATT TGTGGGCTCC 
    TACCAGATTC TCCATCAGCT ACTGCCAGTA GGACTGGTGG GGGATTGGTG 
    TGGATAAGTG GATGGAATTC TCTCCAGCAT GCCACAAATG CAGCATTCCT 
    TGCTGTTGTT TACAGTGACT ACATGCTCAC ATCGCAAACA GCAGCAGTGC 
    AATGCAGTGG AAAGTACTAC AGTCCTACAG ATATACGCAA TTTTGCTATA 
    TCACAGGCTA ATTACATCTT GGGAGACAAC CCAATGAAGC TTAGCTACCT 
    GGTTGGATAT GGGAGCAGCT ACCCACAGCA GGTACACCAC AGAGGGGCGT 
    CGATCCCCGC TGATGCAAAG ACAGGCTGCA AAGGATTCCA GTATCTTCAT 
    TCTACGAGCC CAAACCCAAA CGTCGCCATG GGAGCCCTCG TGGGCGGGCC 
    GTTCCAGAAT GACACTTTCG TCGACTCTCG GGACAATGCT GTTCAGACAG 
    AGTCAAGCAC TTACAACAGC GGCACCCTCG TTGGTCTTCT TTCTGGTCTG 
    GTCACAACTT CCTCTGTGGC GCAGTCGTTC ACCTAGAGCT CTCTCAGAGT 
    TTGGGCAATG GCTTTGACCA ACCGGGAGGA TATACATGTA GCCATGTACA 
    ATGAGAGATT TTTGGCGTGA CCAAAGGCAA TGTGCCATCA GCGAAACGCC 
    TTCACGGTGT TCTTCGTTGT TCATCTTTTG GGTGATGGGT GGTTAGCAGT 
    AGTAGTTCTT GTGCCATAGT GCTATTGTTT ATACAAATAC TGCTGCGTAG 
    TTGCATCCGG TTTGCTGGTG TACTATCTGA TACTACGAGT GTTGTATTTG 
    TAGGACGGAT TCCATTTGTT GATTCTAAAA TGATCTCTGG TAGCTTGTAT 
    TGATGATCTG TAAAATCCCT CCCAAGATGA ACATTGCACT GAACATGTGA 
    GATCACATGG GGAGAGGGAA GTATTAATCC AGTTTGTTCA GTATGTTCAT 
    ACATAAATTG GACATCTTTT CAGTATGGTC C

    Gene models with high sequence identity

    1. AT1G75680.1 [+] show detail - glycosyl hydrolase 9B7
      E-value: 9e-178; Score: 620.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 9 3e-142
    Gene3D Six-hairpin glycosidase 1.2e-145
    HMMPanther Glycoside hydrolase, family 9 8.6e-197
    HMMPanther ENDO-1,4-BETA-GLUCANASE 8.6e-197
    superfamily Six-hairpin glycosidase-like 1.7e-152

    See the detailed result >

    AT1G75680.1

    Model type
    Protein coding
    Short Description
    glycosyl hydrolase 9B7
    Computational Description
    glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR