K35640

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35640

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35640

Determination of introduced cDNA(s)

  • J013095K16 - Rice Full-length cDNAs - Original: J013095K16

    full reading [+] show sequence

    Nucleotide sequence: J013095K16 - full reading
    TTTCCCGCAC CGCCACCGCC ACTCCCCCCC CCCGCGCCGC CACCCCACCC 
    CACCCCACCC CACGCCGTCT CCTCCGATCG CCGGAGAAGG AGGAGGAGGC
    GTCAGCCATG GCGCTGGCCT TCGACGAGTT CGGCCGCCCC TTCATCATCC
    TGCGTGAGCA GGAGAAGAAG TCGCGGCTGC GCGGCCTCGA CGCCCAGAAG
    GCCAACATCG CCGCCGGCAA GGCCGTCGCC CGCATCCTCC GCACCTCGCT
    CGGCCCCAAG GGCATGGACA AGATGCTCCA GTCCCCCGAC GGCGACGTCA
    CCATCACAAA TGATGGCGCA ACGATCCTGG AGCAAATGGA TGTGGACAAC
    CAAATCGCGA AGCTGATGGT GGAGCTGTCC TGCAGTCAAG ACTACGAGAT
    TGGGGATGGT ACCACTGGTG TTGTGGTCAT GGCTGGCTCT CTCCTGGAGC
    AAGCCGAGAA ACTGCTGGAA CGCGGCATTC ACCCCATAAG GATCGCCGAA
    GGTTATGAGT TGGCCTCAAG GATAGCTTTT GATCACCTTG AGCACATCTC
    CCACAAGTTT GAGTTTAGTG CTACCAATAT AGAGCCTCTG GTGCAGACCT
    GCATGACAAC CCTGTCATCG AAAATTGTTA ACCGTTGTAA GAGGACTCTT
    GCTGAGATTG CTGTGAAAGC GGTCCTTGCT GTGGCTGATT TGGAAAGGAA
    GGATGTAAAC TTGGACTTGA TCAAAGTGGA AGGTAAGGTA GGCGGGAAAC
    TAGAGGATAC TGAGCTAGTA TATGGAATCA TTGTCGACAA AGATATGAGC
    CACCCTCAAA TGCCAAAGAG GATTGAGGAT GCTAAGATTG CCATCCTGAC
    CTGCCCATTT GAGCCCCCGA AGCCTAAGAC AAAGCATAAG GTTGACATTG
    ATACTGTAGA GAAGTTCCAG ATGCTGCGTG AGCAAGAGCA AAAATACTTT
    GATGAAATGG TTCAGAAATG CAAGGATGTT GGAGCAACCC TAGTTATTTG
    CCAATGGGGC TTTGATGATG AAGCCAATCA TCTGCTGATG CATAGAAATT
    TGCCAGCTGT CAGATGGGTT GGTGGTGTTG AATTAGAATT GATTGCCATT
    GCTACAGGAG GGCGGATTGT TCCGAGGTTC CAAGAGTTGA GTCCTGAAAA
    GCTTGGGAAG GCTGGAATAG TCAGAGAGAA ATCATTTGGA ACAACAAAAG
    ATCGCATGCT TTACATTGAA CAGTGTGCCA ACTCCAGAGC TGTAACTATC
    TTCATACGTG GTGGCAACAA AATGATGATT GAGGAGACCA AGCGAAGTCT
    TCATGATGCT CTTTGTGTTG CAAGGAATCT TATCCGTAAT AATTCAATTG
    TGTATGGTGG TGGTTCAGCA GAAATATCTT GCTCAGTTGC TGTTGAAGCT
    GCTGCAGATC GGTACCCAGG AGTTGAACAG TATGCAATCA GGTCATTTGC
    TGATGCGTTG GATGCTATTC CACTAGCCTT GGCCGAAAAC AGTGGTTTGT
    CTCCTATTGA TACACTGACA GCAGTAAAAT CTCAACAAGT AAAGGAGAGC
    AATCCTCACT GTGGCATTGA CTGCAACGAT GTTGGGACAA ACCACATGAA
    GGAACAAAAT GTTTTTGAAA CACTGATAGG CAAGCAGCAG CAGATCTTAC
    TGGCAACCCA GGTGGTGAAG ATGATTCTCA AGATCGATGA TGTTATCTCG
    CCTTCTGACT ATTGATGATG CTTTTGAAGA CTATGGAGTT TATTGTGCTA
    GGGCCTTGGC GACAAGCACT TCCAGTAGGC TCTACATTTT CTGTCGATCG
    GTTTTTGATT AACATTTACG CCATGGGTTT GCTTGCTTGT GCTATTTGAT
    GAGCTATCTG TTTGTGTGAA CTTAACTTTT GGTACTTTGT TTTTCGCGCC
    CGCACTTTGT ATAGCTTGAG ACAATAGCAC AATCCCTTTG AAGCTGGCCT
    AGAAGTTTGA GTAGCTACCA TTTGCTCTTG TGCTGCTCAG ATTCGTAGAT
    GCTATATAGG TTGCGCGCTG TGGTAGTATC GTATTGTGTT CTGCATCGTC
    CGCATGTACT CTACTTTTCT TAATGATCAT TTTGAGCCAT ATGAATATTT

    Gene models with high sequence identity

    1. AT1G24510.1 [+] show detail - TCP-1/cpn60 chaperonin family protein
      E-value: 0; Score: 929.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.1e-74
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 9.8e-30
    HMMTigr T-complex protein 1, epsilon subunit 0
    PatternScan Chaperonin TCP-1, conserved site 0
    PatternScan Chaperonin TCP-1, conserved site 0
    PatternScan Chaperonin TCP-1, conserved site 0
    HMMPfam Chaperonin Cpn60/TCP-1 6.5e-147
    superfamily Chaperonin Cpn60/TCP-1 3.8e-87
    superfamily GroEL apical domain-like 2.5e-54
    superfamily GroEL-intermediate domain like 1.4e-30
    HMMPanther T-complex protein 1, epsilon subunit 0
    HMMPanther Chaperonin Cpn60/TCP-1 0

    See the detailed result >

    AT1G24510.1

    Model type
    Protein coding
    Short Description
    TCP-1/cpn60 chaperonin family protein
    Computational Description
    TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR