K35651

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35651

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35651

Determination of introduced cDNA(s)

  • J013108F08 - Rice Full-length cDNAs - Original: J013108F08

    full reading [+] show sequence

    Nucleotide sequence: J013108F08 - full reading 
    GGCTCACCGG AATGCGGCGG TGACGAGACG ACCAACCACC TCCTGCGACT 
    GCTCGGATCT CGCGACGCGG CGGCGGCGGC GAGATACGGA GATCCGGCAG 
    CTTGAGGCAA GAGAGAGAGA AAGCCATGGC GAGCGACGTG CCCATGAGCC 
    CCGAGCTGGA GCAGGTGGAC GGCGAGATCC AGGACATCTT CCGCGCGCTC 
    CAGAATGGGT TCCAGAAGAT GGACAAGATC AAGGACTCCA ACAGGCAGTC 
    CAAGCAGCTG GAAGATCTCA CCGGGAAGAT GAGGGAGTGC AAGCGCTTAA 
    TCAAAGAATT TGATCGTATT CTCAAAGAGG ATGAGAAAAA GAACTCGGCT 
    GATGTCAACA AGCAGCTAAA TGATAAGAAG CAGCTGATGA TCAAAGAATT 
    GAATTCCTAT GTCACATTGA GGAAAACGTA CCAAAGCAGC CTGGGTAATA 
    AGAGGATTGA ACTATTTGAT ACTGGTAATG ATCAGGTGGC CGAGGACAAC 
    ACTGTTCAAA TGGCATCAGA AATGTCAAAT CAACAACTCA TGGATGCCGG 
    AAGGAAACAG ATGGACCAAA CAGATCAAGT TATTGAGCGT TCGAAAAAGG 
    TTGTTGCACA AACCGTTGAA GTTGGATCTC AAACTGCTGC AGCTCTATCA 
    CAACAAACAG AACAAATGAA GAGAATTGGC AATGAGCTAG ACTCGGTTCA 
    CTTTTCACTG AAGAAGGCTA GCCAAATGGT GAAAGAGATT GGTCGCCAGG 
    TTGCAACTGA CAAATGCATC ATGGCATTCC TATTTCTGAT AGTCTGTGGT 
    GTGATTGCAA TCATTGTTGT TAAGATTGTC AACCCTCACA ACAAGAACAT 
    CAGAGACATC CCAGGACTGG CACCACCTGC GCAGAACAGG AAGCTCTTGT 
    CCATAGAATC TTTCGGAAGC CTCTGAGCAT TGCGAGTGGG AGGCAACCGA 
    GATGTTTGGG AGAAGATACT ATGCACGTCG TGACAATTCT TTTGCGCTTG 
    TATATCATCT CATGTCGTTA TTCCCTTCCA CTGATCTATT CTTTTCTTGC 
    TGTAATTGGT CATTAGTGTT GGATTTACGT TTGATGGTTG CAGTGCGGCT 
    TCCTGTTGGC TTTATGAATG TGTGTATATG TGGTAGTGAT GAGGATACAA 
    AGATATTTGT TGTTCTTTTT ATTCTGCAAG TAATCACGTG AAGGCTTCAG 
    TTTGC

    Gene models with high sequence identity

    1. AT3G17440.1 [+] show detail - novel plant snare 13
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NOVEL PLANT SNARE 2e-133
    HMMPanther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATE 2e-133
    ProfileScan Target SNARE coiled-coil domain 10.661
    Gene3D no description 2.9e-06
    HMMPfam Sec20 6.2e-08
    HMMSmart Target SNARE coiled-coil domain 0.001

    See the detailed result >

    AT3G17440.1

    Model type
    Protein coding
    Short Description
    novel plant snare 13
    Curator Summary
    member of NPSN Gene Family
    Computational Description
    novel plant snare 13 (NPSN13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: novel plant snare 12 (TAIR:AT1G48240.1); Has 481 Blast hits to 465 proteins in 133 species: Archae - 4; Bacteria - 38; Metazoa - 112; Fungi - 19; Plants - 145; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR