K35710

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35710

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35710

Determination of introduced cDNA(s)

  • J013146D22 - Rice Full-length cDNAs - Original: J013146D22

    full reading [+] show sequence

    Nucleotide sequence: J013146D22 - full reading 
    GATCCTCCTC CTCCTCGCGC CGCCATAAAT CCTCGTCTCC CGTACCAACT 
    AAACCCCCTT CTCTCTCCGC TGGGGTTCTC GCCGCCGCCG CCGCCGCCGA 
    CGATCTCGTC TCGCACCGCC TCTCTCTCGG TATCTGAGAT TTGGATCGGG 
    CGCGAGGCCG GCGGCTCCAG TCGGCATGGC GCTTGTGTTG CATTGCGGAA 
    GTGGCAACAA AAATGCCTTT AAGGCACTTA TTGCTGCAGA GTACACTGGA 
    GTCAAGGTCG AGCTGACCAA GAATTTTGAG ATGGGTGTCT CAAACAAGAC 
    CCCTGAGTTT CTCAAGATGA ACCCCCTTGG GAAGATTCCT GTTCTGGAGA 
    CTCCTGAAGG TGCTGTTTTT GAGAGCAATG CTATCGCGCG CTATGTTGCT 
    CGCTTGAAGG ACAACAGCTC TCTTTGTGGT TCTTCTCTTA TCGACTATTC 
    TCACATTGAA CAATGGATGG ACTTCTCAGC AACAGAGGTT GATGCCAATA 
    TTGGAAGGTG GTTGTACCCA AGGCTTGGTT TTGGCCCTTA TGTTCCTGTG 
    CTTGAGGAAT TTGCTATTAC TTCATTGAAG AGGTCATTGG GTGCTCTGAA 
    CACACACCTT GCTTCAAACA CATACCTTGT TGGGCATTCA GTTACTCTAG 
    CTGATATTGT GATGACATGC AACCTATATT ATGGGTTTGT TCGGATCTTG 
    ATCAAGAGTT TCACCTCCGA GTTCCCTCAT GTTGAGCGGT ACTTCTGGAC 
    AATGGTTAAC CAGCCCAACT TCAAGAAGGT CATTGGTGAT TTCAAGCAAG 
    CAGAGTCTGT GCCTCCCGTT CAGAAAAAGG CTGCTCCCCC TAAGGAATCA 
    AAAGCAAAGG AGGCCAAGAA GGAGGCTCCG AAGGAGGCCC CTAAACCAAA 
    GGTTGAGGCT TCAGAGGAAG AGGAGGCACC AAAGCCAAAG CCAAAGAATC 
    CTCTTGATCT ACTGCCACCA AGCAAGATGA TTCTTGATGA GTGGAAGAGG 
    CTATACTCAA ACACAAAAAC CAACTTCCGT GAAATTGCCA TTAAAGGTTT 
    CTGGGACATG TATGACCCAG AGGGTTACTC TCTGTGGTTC TGTGACTACA 
    AGTACAACGA TGAGAACACC GTATCGTTTG TGACGATGAA CAAGGTCGGT 
    GGGTTCCTGC AGCGGATGGA TCTGTGCCGC AAGTATGCTT TTGGCAAGAT 
    GCTGGTCATT GGCTCCACAC CGCCCTTCAA GGTCAAGGGA CTCTGGCTCT 
    TCCGTGGTCA GGACATCCCC AAGTTCGTCA TGGATGAGGT CTACGACATG 
    GAGCTCTATG AGTGGACCAA GGTTGACCTC TCTGATGAGG CCCAGAAAGA 
    GCGTGTCAAT GCCATGATTG AGGACCAGGA GCCGTTCGAG GGCGAGGACT 
    TGCTGGATGC AAAATGCTTC AAGTGAGCAG CACAATGTTT AGAAGCAAAA 
    TCATCAGTTG CAAAAGTACT ATTTAGGACT TGAATTCGGA GTTAAAACAG 
    TTGCCTTTTT GGTGGAGTTT TGTTACTTGC TGTTTATTTG ACCTGGTATA 
    CCTTTTGAAC TGGTTGATTT TTGTGCAATG TCTCAGATTT TGG

    Gene models with high sequence identity

    1. AT1G57720.2 [+] show detail - Translation elongation factor EF1B, gamma chain
      E-value: 9e-158; Score: 553.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translation elongation factor EF1B, gamma chain, conserved 1.2e-41
    HMMPfam Glutathione S-transferase, N-terminal 1.3e-13
    HMMPfam Glutathione S-transferase, C-terminal 5.2e-10
    HMMPanther ELONGATION FACTOR 1 GAMMA 2.2e-96
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.2e-96
    superfamily Translation elongation factor EF1B, gamma chain, conserved 1.2e-61
    superfamily Glutathione S-transferase, C-terminal-like 1e-37
    superfamily Thioredoxin-like fold 3.9e-19
    Gene3D Thioredoxin fold 1.4e-13
    Gene3D Glutathione S-transferase, C-terminal-like 8.7e-38
    ProfileScan Translation elongation factor EF1B, gamma chain, conserved 77.495
    ProfileScan Glutathione S-transferase, N-terminal 18.35
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 24.124

    See the detailed result >

    AT1G57720.2

    Model type
    Protein coding
    Short Description
    Translation elongation factor EF1B, gamma chain
    Computational Description
    Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR