K35730

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35730

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35730

Determination of introduced cDNA(s)

  • J033050H01 - Rice Full-length cDNAs - Original: J033050H01

    full reading [+] show sequence

    Nucleotide sequence: J033050H01 - full reading 
    GTCCCCACGA CGCCACCGAG CCCGGGAGGG AGAGGCCGAC GCGACGCGAC 
    AAGTCCACAC CCACACACGC ACCAGCACCA GCCCAACTCA CTCCTCCTCC 
    TCCAGATTCC GCCGCTCCCT CCCCCTCGCC GCGCGGCGCC GCCGCCGCCG 
    CGGTGGCCAC CAGCAACGTC GAGCTCGCCG TCGCCCAGGC CGGCGGATGA 
    GAGCCAGTGA ACCATGGGAG GATTTTGCTG TTGCCTCTGC ACTGACGATT 
    TCGAGGAGTA CGCTCATCCA AATAACCCTA TCTATAGGCA AGGTGTATGC 
    CTAAGGAATT TTTTCCACAA CTTTTTTGGC GGGTATACTG CCACATTCCA 
    GAGGCTCGAA TCTAGACCTA GCAACCCAGC TCAAGGGGCT GCTCCATTGG 
    CATCCACTAA TCCAAGTACC AATATAACTG ACAATTCATT ATCCGAAACT 
    TATCACCTTG TGTCCAGACC TCCACCGTAT GATACTGATC CTAGATATGC 
    CCGTGTTCAA AGAGAGGGTT TGGTATCTAG GCGTGAAAAG TCTATAAATC 
    TAACACAAGA AGAGTCACTG GCTCTTAGGC GAAATGGCAG CAGCTCTGGC 
    ATTGAACATT TAGCTGCTCA GAAGAAATGG AGCAGCACTG AACCTGAGGG 
    TGAATATAAA GTCCATCGCT CTGAATCCAC CAAGAGTTTA TCCGCAAAAT 
    CGTATAACAG CAGTTTTGCA GTTGTCACTT CAGAAGATGA AGATGTCTGC 
    CCTACTTGTC TAGAAGAATA CACTCCAGAC AATCCGAAGA TTATAGCTAA 
    ATGCTCCCAT CATTATCATC TTAGTTGTAT CTACGAATGG ATGGAAAGAA 
    GTGATACTTG TCCGATTTGT GGGAAGGAAA TGGAGTTTTG TGAAACCCCA 
    TGAGAGATTT CTCGCTGGTT GTATCAGTGG AAGGCAAAAG ATCTACAGTG 
    TGATATGCTG GAGAGTCTGT AAATAATACT AGTTGTCCAG ATAGATCTCT 
    TTTTTGAGAT CAAATTCTTA TGTGTACTGA AATCATGGCC TACAAAAAAG 
    AAAATGCGCT AGAATTTGAT ATATGAATAT ATTTTTGAAT GC

    Gene models with high sequence identity

    1. AT3G02290.1 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-49; Score: 193.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.6e-11
    HMMPanther ZN/RING FINGER PROTEIN 2 1.2e-08
    HMMPanther RING FINGER CONTAINING PROTEIN 1.2e-08
    ProfileScan Zinc finger, RING-type 11.678
    superfamily RING/U-box 1.6e-15
    HMMPfam Zinc finger, C3HC4 RING-type 2.8e-07
    HMMSmart Zinc finger, RING-type 3.6e-05

    See the detailed result >

    AT3G02290.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15790.2); Has 5868 Blast hits to 5858 proteins in 250 species: Archae - 0; Bacteria - 2; Metazoa - 1823; Fungi - 365; Plants - 2709; Viruses - 17; Other Eukaryotes - 952 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR