K35732

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35732

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35732

Determination of introduced cDNA(s)

  • J023083A10 - Rice Full-length cDNAs - Original: J023083A10

    full reading [+] show sequence

    Nucleotide sequence: J023083A10 - full reading 
    GCTTTTGCCC CCCTCCTCTC CTCCGCCTCC TCCACACACG AGCGCGTCCC 
    CCGACGCCGC GCCGAGATCT AGGGTTGGGC GCGCGCGACG CCCCCCCCCC 
    GCGGCGAGGA GGATGAGCAG CCCCCATGGC GGCCTCGACG ACCAGATCGA 
    GCGCCTCATG CAGTGCAAGC CCCTCCCCGA GCCCGAGGTC AGAGCACTTT 
    GCGAGAAGGC AAAAGAGATA TTGATGGAGG AGAGCAACGT TCAACCTGTA 
    AAGAGTCCTG TTACAATATG TGGTGATATT CATGGGCAGT TTCATGACCT 
    TGCAGAACTG TTCCGAATCG GTGGAAAGTG CCCAGATACA AACTACTTGT 
    TTATGGGAGA TTACGTGGAT CGTGGTTATT ATTCTGTTGA AACTGTCACG 
    CTTTTGGTGG CTTTAAAGGT TCGTTATCCT CAGCGAATTA CTATTCTCAG 
    AGGAAACCAC GAAAGTCGAC AGATCACTCA AGTTTATGGA TTCTATGACG 
    AGTGCTTAAG GAAGTACGGG AATGCAAATG TGTGGAAAAC TTTTACAGAT 
    CTCTTCGATT ACTTCCCCTT GACAGCATTG GTTGAGTCAG AAATATTTTG 
    CCTGCATGGT GGATTATCGC CATCCATTGA GACACTTGAT AACATACGTA 
    ACTTCGATCG TGTCCAAGAA GTTCCCCATG AAGGGCCCAT GTGTGATCTT 
    CTGTGGTCTG ATCCAGACGA TCGATGTGGT TGGGGTATTT CTCCTCGAGG 
    TGCTGGATAC ACCTTCGGGC AGGATATATC AGAGCAGTTC AACCATACCA 
    ATAATTTAAG ACTTATTGCT AGAGCTCACC AGTTGGTCAT GGAGGGATTC 
    AATTGGGCTC ATGAGCAAAA GGTTGTTACC ATATTTAGTG CACCTAATTA 
    TTGCTATCGC TGTGGGAACA TGGCATCAAT CTTGGAAGTT GATGATTGCA 
    GGGAGCATAC ATTCATCCAG TTTGAGCCAG CCCCAAGAAG GGGAGAGCCA 
    GATGTAACTC GTAGAACACC TGACTATTTC CTGTGATGTA AAAGTGGTGG 
    ACTGTCTCTG CAGCAAATGT TTGATAGCTA GGTGAAGTTC CCTGGTTGCA 
    GATATTTTTT TCCCCTCGAA TCTCCTGTGT GTTATTCTTA CTACCTTTGC 
    CCGTGGCGCT TGGCTATCGC GAGCTGCTTT GCTGCATCAT GATTCAAGTG 
    TATACCTACA GCTGGGAGGA TTCATCGTGT TCTCACTTAT CTCTAATTGG 
    CTGATGCTTG GCTTGGGGGC TGCAGTGGTG ACTCGAAGCA TCAAGTAGCA 
    AATTTGTATT ATGAAAGGAA AACTATTCTC TTTGTATTCA TTTTGTTCGC 
    CTTTCTTCCC CACAAATTTC ACCTAATTTT CTTTTTTCTT TTTTCATGAT 
    CCTTGTAGAG ATGAACAATG TAGTTGTATG GCTCCCTGTT GAGCCGGTAG 
    GTCTTTCTGA GTACATCTTG ATTTGCCGTA CATAATTGCT TGAAAAACAA 
    GTATTAGAAT TCTTTGTGAC CAACACTTGA GCTCCGATTT TTC

    Gene models with high sequence identity

    1. AT3G58500.1 [+] show detail - protein phosphatase 2A-4
      E-value: 4e-176; Score: 614.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    Coil coiled-coil 0
    HMMPfam Metallophosphoesterase 7.1e-42
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 7.8e-264
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.8e-264
    Gene3D no description 2.7e-126
    superfamily Metallo-dependent phosphatases 5.8e-128
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.5e-163
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0

    See the detailed result >

    AT3G58500.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-4
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1); Has 6816 Blast hits to 6628 proteins in 481 species: Archae - 80; Bacteria - 203; Metazoa - 2402; Fungi - 1409; Plants - 984; Viruses - 3; Other Eukaryotes - 1735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR