K35743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35743

Determination of introduced cDNA(s)

J023077D19 - Rice Full-length cDNAs - Original: J023077D19

full reading [+] show sequence

TGGAGAGAGA GAGCCACTTG CGTGCTGGCC TCTCTCACTG TTGTGATTGG 
TGCCACCTCC TCCTCCTCTG CCTCTCTCCT CTCCTCTTCT CCCCCAATCC 
CTCCTCCTCC TCCACCATCG CTGCTGCTCT GCTGCTACTA CTCTCTTCCT 
CCTCCTCCGC TATCTACTGC TCCCTCCTCT CTTGTTTTTC TTTTCTCTCC 
TCCTTTTCCA CCCACCGCAC CACCTCGCTC GCTTTCCTCC TCTCGATCGA 
TCTCCTCCAA TCCCGCAGAG TCAAAGATTT GCTCCAAGAA CGGCGGATGA 
CAAGGCTTCC GGGGATGTAG CTTCTTGCGG CGGCGGATGG ATGAGATGAG 
CTGCGGCGGC GGAGGTGGTG GAGCGAGGTG GAAGAGGGCG CGGGTGGCGG 
GGATGGGCGA GGGGAAGGCG GGAGGAGGTG GTGGCGCGGC GTTCTTGGGG 
CTGGAGAGGG TGGGGATGGT GGTGCGGATG CTGCCGGTGC CGGAGAAGGT 
GTCGGCGAGG GCGCGGGTGG TGAGGGGGAG CCTGGTGGCG CACTTCCGGG 
GGTGGAGGGT GGTGCGGGAG ACGTGGTGGT GGGTGCTGCT GCTGTGGATC 
CTCGCCGGCT CCCTCGGCTC CTTCTACCTC TTCCTCTTCA TGAACGCCCA 
GTCCCTCGAC AAGCGCCGCG ACTCCCTCGC CAGCATGTGC GACGAGCGCG 
CCCGCATGCT CCAGGACCAG TTCAACGTCA GCATGAACCA CCTCCAGGCC 
CTCGCCATCC TCGTCTCCAC CTTCCACCAC TCCAAGACCC CCTCCGCCAT 
CGACCAGGTA TAGTCATTCA TTTCCACAAA CACCTTGCCT GCATGCCATG 
CCATACCTTC TGATGATGGG GAATTCAGAT GACGTTCGCG AGGTACGCGG 
AGAGGACGGC GTTCGAGCGG CCGCTGACGA GCGGGGTGGC GTACGCGGTG 
CGGGTGACGC ACGGCGAGCG GGAGCAGTTC GAGCGGCAGC AAGGGTGGGC 
GATCAAGAAG ATGTACTCCT CCTCCAACAA GAAGCAGTCG TCGCCGGGGC 
CCGGGCCCGG CGACGCCGCC GTCGCGGAGA TCCGGGAGCC CGCCGAGGAG 
TACGCCCCGG TCATCTTCGC CCAGGACGCC TACAAGCACG TCATCTCCTT 
CGACATGCTC TCCGGGAATG AGGATCGGGA TAACATATTA CGGGCTAGGA 
AATCTGGCAA GGGTGTCCTG ACTGCTCCTT TCAAGCTACT GAATAATCGC 
CTCGGAGTGA TCTTGACGTA CACTGTTTAT AAGTATGAGC TCCCTGCATA 
TGCCAGGCCA CATGAACGCA TCCAAGCCGC GATTGGCTAT TTGGGCGGCA 
TATTTGACAT ACAAGCACTC GTCGAGAAGT TGCTCAAACA ACTCGCGAGC 
CAGGAATCCA TCATGGTGAA TGTGTATGAT ACGACCAACG AGAGCCCGAT 
CAGTATGTAC GGTGATGATA CTGGGAGTGG CATGTGCCAT GTCAGCGTGC 
TCAACTTTGG TGATCCGTCG AGAAAGCATG AGATGCATTG CAGGTTTGAA 
AAAAAGCCAC CATGGCCATG GCTGGCAATA ACGTCATCGT TTGGAACTCT 
TGTGATTGCT TTACTGACTG GTCACATATT TCAAGCTACT GTCCATCGGA 
TTGCTAAAGT TGAAGATGAT TTCCACAAGA TGAGCGAACT CAAGAAGCGT 
GCAGAAGATG CAGACGTCGC AAAGTCACAG TTCTTGGCTA CTGTTTCACA 
TGAGATCAGA ACTCCAATGA ATGGTGTTCT AGGGATGCTC CAAATGCTCA 
TGGATACTGA TTTGGACACG ACGCAGCAGG ACTATGTTAG AACTGCCCAA 
GCTAGTGGAA AAGCTTTGGT CTCTCTCATC AATGAGGTTC TTGATCAGGC 
AAAGATTGAG TCTGGTAAAC TTGAGCTCGA GACGGTGCCC TTTGATCTTA 
GAACAGTTTG TGACGACATT TTATCTCTGT TTTGTGGGAA AGCTCAGGAG 
AAAGGACTGG AGTTAGCAGT GTATGTCTCG GATCAAGTTC CACAGATACT 
TATTGGCGAT CCTGGCAGGA TAAGACAAAT CATTACGAAT CTTGTCGGGA 
ACTCCATAAA GTTCACAGAG AGAGGGCATA TATACCTGAC AGTTCATGTA 
GTTGAAGAGG TCATGAGTTG TTTGGAGGTA GAGACAGGAA TTCAGAACAC 
AAACACTTTA AGTGGCTATC CAGTAGCCAA CAGAAGATGT AGCTGGGAGA 
GCATTCGGCT TTTCAACAGA GAATTACACT CATCTGAGAA GTCTTTTGCG 
CCCATCGCAT CTGATTCAAT AAGCTTGGTT ATATCTGTTG AAGATACTGG 
CGTCGGCATC CCATTTGAAG CCCAATCCCG TGTGTTCACC CCTTTCATGC 
AGGTAGGTCC ATCCATTGCC CGCATCCATG GGGGCACTGG CATTGGATTA 
AGCATCAGCA AGTGCTTGGT TGGTCTCATG AAGGGAGAAA TCGGTTTTGC 
AAGTAAGCCC CATGTTGGTT CTACTTTCAC CTTCACCGCG GTGCTTATGA 
GGGCACACTG CAAAGGAAAT GACATCAAAT CATCAGAATT TAAAGGGATC 
AATGCATTGG TTGTTGATCA TAGGCCAGTC CGTGCAAAGG TTACCAAGTA 
TCACTTGCAA AGACTTGGAG TTAAGACCGA ACTGACAGCT GAGCTAAATC 
AGTTCATTTC TAAATTAAAC TCTGGATCAC TGACTGCAAA GCTAGTGCTA 
ATAGACAAGG AAACCTGGCT TAAGGAATCC CATTGCACGC CTCTTCTGGT 
TAACAAATTG AGGAATAATG ACAAGCCAGA CTCTCCTAAG TTATTTCTTT 
TGGGGAGCTC TGCAAGTTCT CCCAAGGGCG GTTCAGATAC ATCCAGGGAA 
CATAACTTGA ATGTAATAAT GAAGCCGCTT CGTGCAAGCA TGCTTCAGGT 
CTCACTACGA CGAGCACTAG GTGGGGTCGA TAAGGTGCAC TGCAGGAATG 
GAGTAGTTGG CAATTCAACA TTGGGCAGCC TTCTTCACAA GAAGCAAATC 
ATTGTTGTCG ACGACAATAT CGTTAACCTG AAGGTGGCTG GTGCTCTTAA 
GAAGTATGGT GCCGAAGTTA CTTGTGCAGA CAGCGGGAAA AAAGCAATCA 
CATTGCTAAA ACCCCCGCAC AATTTTGATG CTTGTTTCAT GGACATACAG 
ATGCCAGAAA TGGATGGGTT TGAAGCCACT AGAAGGATTA GAGTGATGGA 
AAGAGATCTA AATGAGCGAA TAGAACGCGG AGAGGCGCCA CCAGAATGTG 
CTAGTATTCA GAGGTGGCGA ACTCCTATAT TGGCGATGAC GGCGGATGTT 
ATACAGGCAA CACACGAGGA GTGCCTGAAA AGCGAAATGG ATGGCTATGT 
CTCCAAGCCA TTTGAAGGGG AGCAGCTGTA CAGCGAAGTA GCGCGGTTTT 
TCCAAAATCA TGACCAAGTT GAATAGGAAG GTTTATATGG AATGTAAATT 
GGTGGAGGAT GTTGCCACGC ACCGATCACA TGCCATGGCA CAGAATTTTG 
TCCAAGATGC TGTGTTCCCA AGAGAATGAA GCACAAAAGG TGTCGAGATG 
GAACCGCCCA TGTTCTGATC TGTAGTACAC CATCTGACCT AGAGGCAAAA 
TTAACTGCGC AATTACATGA GAACAAGATA CATGTGCAGC AAAGGTACTC 
AAACAATTTC TTGAAGTCAA GGCGTGTGAA AATGGCAGCT GCATATTCAC 
TAACTGCAGA AGAAGCAGAA GTCGTTCTCG TAGATGCCCT CTGCCTTTGT 
AATATAAACG TAGGGAGAGA AAATTTTTCC TGTCTTCTTT TTTTTTCCTC 
GGGAATTTTA CGGTGTACAT ATTAGGTGTT GGTGATATGT GCAGGCAATT 
CCTTGGTATA TTTGGATGTG TTTTTTTTTC TGCAAGGTTT GTGGAAGCTG 
TAAATGACAC AATTCAAAGG TGAAGCCTTT GGTTTCTTCC ATTGACATTT 
TTGACAAGAA TATTGATGCC GTCGGCTCTC GGCTGTTCTT TTGC

Gene models with high sequence identity

AT1G27320.1 [+] show detail - histidine kinase 3
E-value: 0; Score: 107.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Signal transduction histidine kinase-related protein, C-terminal	7.2e-12
FPrintScan	Signal transduction histidine kinase-related protein, C-terminal	7.2e-12
FPrintScan	Signal transduction histidine kinase-related protein, C-terminal	7.2e-12
FPrintScan	Signal transduction histidine kinase-related protein, C-terminal	7.2e-12
FPrintScan	PRICHEXTENSN	3e-10
FPrintScan	PRICHEXTENSN	3e-10
FPrintScan	PRICHEXTENSN	3e-10
FPrintScan	PRICHEXTENSN	3e-10
Gene3D	ATPase-like, ATP-binding domain	3.6e-27
Gene3D	no description	1.1e-25
Coil	coiled-coil	0
HMMSmart	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	4.7e-23
HMMSmart	ATPase-like, ATP-binding domain	4.7e-30
HMMSmart	Signal transduction response regulator, receiver domain	2e-28
superfamily	ATPase-like, ATP-binding domain	1.1e-42
superfamily	CheY-like	6.6e-27
superfamily	Signal transduction histidine kinase, homodimeric	3e-18
superfamily	CheY-like	4.3e-06
HMMPanther	HISTIDINE KINASE 1, 2, 3 PLANT	0
HMMPanther	SENSOR HISTIDINE KINASE-RELATED	0
HMMPanther	HISTIDINE KINASE 1, 2, 3 PLANT	9.4e-29
HMMPanther	SENSOR HISTIDINE KINASE-RELATED	9.4e-29
ProfileScan	PROKAR_LIPOPROTEIN	5
ProfileScan	Signal transduction histidine kinase, core	41.219
ProfileScan	Signal transduction response regulator, receiver domain	24.994
ProfileScan	CHASE	30.688
HMMPfam	CHASE	3.5e-44
HMMPfam	ATPase-like, ATP-binding domain	3.7e-28
HMMPfam	Signal transduction response regulator, receiver domain	5.3e-17
HMMPfam	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	7.3e-19

See the detailed result >

AT1G27320.1

Model type: Protein coding
Short Description: histidine kinase 3
Curator Summary: Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.
Computational Description: histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink).
Link: InterPro Scan - TAIR