K35743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35743

Determination of introduced cDNA(s)

  • J023077D19 - Rice Full-length cDNAs - Original: J023077D19

    full reading [+] show sequence

    Nucleotide sequence: J023077D19 - full reading
    TGGAGAGAGA GAGCCACTTG CGTGCTGGCC TCTCTCACTG TTGTGATTGG 
    TGCCACCTCC TCCTCCTCTG CCTCTCTCCT CTCCTCTTCT CCCCCAATCC
    CTCCTCCTCC TCCACCATCG CTGCTGCTCT GCTGCTACTA CTCTCTTCCT
    CCTCCTCCGC TATCTACTGC TCCCTCCTCT CTTGTTTTTC TTTTCTCTCC
    TCCTTTTCCA CCCACCGCAC CACCTCGCTC GCTTTCCTCC TCTCGATCGA
    TCTCCTCCAA TCCCGCAGAG TCAAAGATTT GCTCCAAGAA CGGCGGATGA
    CAAGGCTTCC GGGGATGTAG CTTCTTGCGG CGGCGGATGG ATGAGATGAG
    CTGCGGCGGC GGAGGTGGTG GAGCGAGGTG GAAGAGGGCG CGGGTGGCGG
    GGATGGGCGA GGGGAAGGCG GGAGGAGGTG GTGGCGCGGC GTTCTTGGGG
    CTGGAGAGGG TGGGGATGGT GGTGCGGATG CTGCCGGTGC CGGAGAAGGT
    GTCGGCGAGG GCGCGGGTGG TGAGGGGGAG CCTGGTGGCG CACTTCCGGG
    GGTGGAGGGT GGTGCGGGAG ACGTGGTGGT GGGTGCTGCT GCTGTGGATC
    CTCGCCGGCT CCCTCGGCTC CTTCTACCTC TTCCTCTTCA TGAACGCCCA
    GTCCCTCGAC AAGCGCCGCG ACTCCCTCGC CAGCATGTGC GACGAGCGCG
    CCCGCATGCT CCAGGACCAG TTCAACGTCA GCATGAACCA CCTCCAGGCC
    CTCGCCATCC TCGTCTCCAC CTTCCACCAC TCCAAGACCC CCTCCGCCAT
    CGACCAGGTA TAGTCATTCA TTTCCACAAA CACCTTGCCT GCATGCCATG
    CCATACCTTC TGATGATGGG GAATTCAGAT GACGTTCGCG AGGTACGCGG
    AGAGGACGGC GTTCGAGCGG CCGCTGACGA GCGGGGTGGC GTACGCGGTG
    CGGGTGACGC ACGGCGAGCG GGAGCAGTTC GAGCGGCAGC AAGGGTGGGC
    GATCAAGAAG ATGTACTCCT CCTCCAACAA GAAGCAGTCG TCGCCGGGGC
    CCGGGCCCGG CGACGCCGCC GTCGCGGAGA TCCGGGAGCC CGCCGAGGAG
    TACGCCCCGG TCATCTTCGC CCAGGACGCC TACAAGCACG TCATCTCCTT
    CGACATGCTC TCCGGGAATG AGGATCGGGA TAACATATTA CGGGCTAGGA
    AATCTGGCAA GGGTGTCCTG ACTGCTCCTT TCAAGCTACT GAATAATCGC
    CTCGGAGTGA TCTTGACGTA CACTGTTTAT AAGTATGAGC TCCCTGCATA
    TGCCAGGCCA CATGAACGCA TCCAAGCCGC GATTGGCTAT TTGGGCGGCA
    TATTTGACAT ACAAGCACTC GTCGAGAAGT TGCTCAAACA ACTCGCGAGC
    CAGGAATCCA TCATGGTGAA TGTGTATGAT ACGACCAACG AGAGCCCGAT
    CAGTATGTAC GGTGATGATA CTGGGAGTGG CATGTGCCAT GTCAGCGTGC
    TCAACTTTGG TGATCCGTCG AGAAAGCATG AGATGCATTG CAGGTTTGAA
    AAAAAGCCAC CATGGCCATG GCTGGCAATA ACGTCATCGT TTGGAACTCT
    TGTGATTGCT TTACTGACTG GTCACATATT TCAAGCTACT GTCCATCGGA
    TTGCTAAAGT TGAAGATGAT TTCCACAAGA TGAGCGAACT CAAGAAGCGT
    GCAGAAGATG CAGACGTCGC AAAGTCACAG TTCTTGGCTA CTGTTTCACA
    TGAGATCAGA ACTCCAATGA ATGGTGTTCT AGGGATGCTC CAAATGCTCA
    TGGATACTGA TTTGGACACG ACGCAGCAGG ACTATGTTAG AACTGCCCAA
    GCTAGTGGAA AAGCTTTGGT CTCTCTCATC AATGAGGTTC TTGATCAGGC
    AAAGATTGAG TCTGGTAAAC TTGAGCTCGA GACGGTGCCC TTTGATCTTA
    GAACAGTTTG TGACGACATT TTATCTCTGT TTTGTGGGAA AGCTCAGGAG
    AAAGGACTGG AGTTAGCAGT GTATGTCTCG GATCAAGTTC CACAGATACT
    TATTGGCGAT CCTGGCAGGA TAAGACAAAT CATTACGAAT CTTGTCGGGA
    ACTCCATAAA GTTCACAGAG AGAGGGCATA TATACCTGAC AGTTCATGTA
    GTTGAAGAGG TCATGAGTTG TTTGGAGGTA GAGACAGGAA TTCAGAACAC
    AAACACTTTA AGTGGCTATC CAGTAGCCAA CAGAAGATGT AGCTGGGAGA
    GCATTCGGCT TTTCAACAGA GAATTACACT CATCTGAGAA GTCTTTTGCG
    CCCATCGCAT CTGATTCAAT AAGCTTGGTT ATATCTGTTG AAGATACTGG
    CGTCGGCATC CCATTTGAAG CCCAATCCCG TGTGTTCACC CCTTTCATGC
    AGGTAGGTCC ATCCATTGCC CGCATCCATG GGGGCACTGG CATTGGATTA
    AGCATCAGCA AGTGCTTGGT TGGTCTCATG AAGGGAGAAA TCGGTTTTGC
    AAGTAAGCCC CATGTTGGTT CTACTTTCAC CTTCACCGCG GTGCTTATGA
    GGGCACACTG CAAAGGAAAT GACATCAAAT CATCAGAATT TAAAGGGATC
    AATGCATTGG TTGTTGATCA TAGGCCAGTC CGTGCAAAGG TTACCAAGTA
    TCACTTGCAA AGACTTGGAG TTAAGACCGA ACTGACAGCT GAGCTAAATC
    AGTTCATTTC TAAATTAAAC TCTGGATCAC TGACTGCAAA GCTAGTGCTA
    ATAGACAAGG AAACCTGGCT TAAGGAATCC CATTGCACGC CTCTTCTGGT
    TAACAAATTG AGGAATAATG ACAAGCCAGA CTCTCCTAAG TTATTTCTTT
    TGGGGAGCTC TGCAAGTTCT CCCAAGGGCG GTTCAGATAC ATCCAGGGAA
    CATAACTTGA ATGTAATAAT GAAGCCGCTT CGTGCAAGCA TGCTTCAGGT
    CTCACTACGA CGAGCACTAG GTGGGGTCGA TAAGGTGCAC TGCAGGAATG
    GAGTAGTTGG CAATTCAACA TTGGGCAGCC TTCTTCACAA GAAGCAAATC
    ATTGTTGTCG ACGACAATAT CGTTAACCTG AAGGTGGCTG GTGCTCTTAA
    GAAGTATGGT GCCGAAGTTA CTTGTGCAGA CAGCGGGAAA AAAGCAATCA
    CATTGCTAAA ACCCCCGCAC AATTTTGATG CTTGTTTCAT GGACATACAG
    ATGCCAGAAA TGGATGGGTT TGAAGCCACT AGAAGGATTA GAGTGATGGA
    AAGAGATCTA AATGAGCGAA TAGAACGCGG AGAGGCGCCA CCAGAATGTG
    CTAGTATTCA GAGGTGGCGA ACTCCTATAT TGGCGATGAC GGCGGATGTT
    ATACAGGCAA CACACGAGGA GTGCCTGAAA AGCGAAATGG ATGGCTATGT
    CTCCAAGCCA TTTGAAGGGG AGCAGCTGTA CAGCGAAGTA GCGCGGTTTT
    TCCAAAATCA TGACCAAGTT GAATAGGAAG GTTTATATGG AATGTAAATT
    GGTGGAGGAT GTTGCCACGC ACCGATCACA TGCCATGGCA CAGAATTTTG
    TCCAAGATGC TGTGTTCCCA AGAGAATGAA GCACAAAAGG TGTCGAGATG
    GAACCGCCCA TGTTCTGATC TGTAGTACAC CATCTGACCT AGAGGCAAAA
    TTAACTGCGC AATTACATGA GAACAAGATA CATGTGCAGC AAAGGTACTC
    AAACAATTTC TTGAAGTCAA GGCGTGTGAA AATGGCAGCT GCATATTCAC
    TAACTGCAGA AGAAGCAGAA GTCGTTCTCG TAGATGCCCT CTGCCTTTGT
    AATATAAACG TAGGGAGAGA AAATTTTTCC TGTCTTCTTT TTTTTTCCTC
    GGGAATTTTA CGGTGTACAT ATTAGGTGTT GGTGATATGT GCAGGCAATT
    CCTTGGTATA TTTGGATGTG TTTTTTTTTC TGCAAGGTTT GTGGAAGCTG
    TAAATGACAC AATTCAAAGG TGAAGCCTTT GGTTTCTTCC ATTGACATTT
    TTGACAAGAA TATTGATGCC GTCGGCTCTC GGCTGTTCTT TTGC

    Gene models with high sequence identity

    1. AT1G27320.1 [+] show detail - histidine kinase 3
      E-value: 0; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 7.2e-12
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 7.2e-12
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 7.2e-12
    FPrintScan Signal transduction histidine kinase-related protein, C-terminal 7.2e-12
    FPrintScan PRICHEXTENSN 3e-10
    FPrintScan PRICHEXTENSN 3e-10
    FPrintScan PRICHEXTENSN 3e-10
    FPrintScan PRICHEXTENSN 3e-10
    Gene3D ATPase-like, ATP-binding domain 3.6e-27
    Gene3D no description 1.1e-25
    Coil coiled-coil 0
    HMMSmart Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 4.7e-23
    HMMSmart ATPase-like, ATP-binding domain 4.7e-30
    HMMSmart Signal transduction response regulator, receiver domain 2e-28
    superfamily ATPase-like, ATP-binding domain 1.1e-42
    superfamily CheY-like 6.6e-27
    superfamily Signal transduction histidine kinase, homodimeric 3e-18
    superfamily CheY-like 4.3e-06
    HMMPanther HISTIDINE KINASE 1, 2, 3 PLANT 0
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 0
    HMMPanther HISTIDINE KINASE 1, 2, 3 PLANT 9.4e-29
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 9.4e-29
    ProfileScan PROKAR_LIPOPROTEIN 5
    ProfileScan Signal transduction histidine kinase, core 41.219
    ProfileScan Signal transduction response regulator, receiver domain 24.994
    ProfileScan CHASE 30.688
    HMMPfam CHASE 3.5e-44
    HMMPfam ATPase-like, ATP-binding domain 3.7e-28
    HMMPfam Signal transduction response regulator, receiver domain 5.3e-17
    HMMPfam Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 7.3e-19

    See the detailed result >

    AT1G27320.1

    Model type
    Protein coding
    Short Description
    histidine kinase 3
    Curator Summary
    Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.
    Computational Description
    histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR