K35751

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35751

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35751

Determination of introduced cDNA(s)

  • J023147K18 - Rice Full-length cDNAs - Original: J023147K18

    full reading [+] show sequence

    Nucleotide sequence: J023147K18 - full reading 
    GAAGGAGGTG GCCAACTGGG GACTTGTCTT CCGAATTTCT ATCTTTTGCC 
    AGATCACCAC GGCATGCCTC TTCCTCCTCC ACTTCAACTA CCGTGCCATC 
    CGAAGCTACT CCAGATGCCA TTCGACCAAG AAGATCAGCC CGGAATCCAT 
    GGCGTGATGC TCTCTTCTGA CCACTGCGGG CTGTACCCTC TGCCGGCGCT 
    TCCGTTAAGC AACTCCGCCG CCGCCGCCGC CGCAACCGTC GCATTGGGGA 
    AGCACAGTGC AGCCGCCGGT TCCATGCCCA ATATTGGCGG CGCTGAGGAG 
    GTGGCCACCA CTGTAACCAA AGCTGGCAAT GAGAGTACTA CTTGCAATGG 
    CTCCACTACA TGGTGGAGGG GCTCGACGAT GGCGGCGATG GGGGAGAAGG 
    GGAAGATGAA GATCAGGAGG AAGATGAGGG AGCCGAGGTT CTGCTTCCAG 
    ACCAGAAGCG AAGTGGATGT GCTGGATGAC GGGTACAAGT GGAGGAAGTA 
    CGGACAGAAG GTTGTCAAGA ACAGTCTCCA TCCCAGGTAC ATATGCTCAA 
    CTTAACCAAA ACCCTACATA TTTGATTTCT TATATCATTT ATACATATGT 
    GTAGATAATA GATTCCCCGT TTCTTATCAA TTAACTAATT ATAAACATAA 
    ACAGAAGAAT GTCTCGATGC CTATTTAATT TGGTTAATTA GTAATACGCA 
    AGTTTATATA TACCAGATAA AATATCAATT TTATATGTAC AGAACTGAGC 
    CATGTTGATC TTGTTTTTTC TCCTAAAGGG CTTCTTCAGA ACATGGAAAA 
    TTTGTAGGAT TTTCACAGGA AACATTTCAA TTTCTCCCAA ATTCTCGTGA 
    AATTCCTCCC AACCCAATAT ACCAAGGGTA CTCTCTATGG CAGAAGAGAA 
    TTAATGCATG CCTGGTTAAA CTAACTTGTC AACAAAGGTC TTGATATGAA 
    TAGATTAGAA GCTGATTTAA GACAAGGCAA AATATCTACA AATATAATTA 
    TATATATGCA GGCTAGATTA TTACTTTTCC TTTTTATATC AATATAGTTA 
    AAAGCGATTT TACAGTACTT AAGAGATGTT AGGAGGTGCC ACCGTTTTTA 
    ATGTAAATTC TGGTACCTCT GTAATTAGTA TTTAAGGTAC TACCAAGTCT 
    TTACAATAGA AAATATGGTA TCTCTTAACA AGGGAAATGT AAAATTCCTC 
    ATTTAATTTG GTATGTGCTT ATCTATTAGC TCTGTACTTA TGATATATAT 
    GTTTATTTTG CTTCTACCTA CAATCGAAAT AAACGCAGCT ACTCCTATAA 
    CATATTGCTG TCCAATTATA TGATCCATAT GTCAAAAGTG TTCGCCAGTA 
    TATGGAAAAG TTTCACACAC TTGTCATCAG ATGACCCTTG CAAATAATCT 
    TAATTATGTA CTAGTTAATT AAGGTCCAAG AATTAATGGG TATTTTAATT 
    AAATGGGGGT TCACTTTGTT ATAACAATGA AAATAATCTA TTGAGCTGAA 
    TCTGACAGGC TCACCTTCTG CACAGTTTTA TTAAAAAAAT ATTTTTAATG 
    CAAATTGTTA CATTTTGGTG AACAAGCTTA ATTAGTTACT AGTTACATTT 
    CGGTGACAAG TTTAACAAAC TCATCATACA TAACTAGCCG TATCAGTTCT 
    TTAATTTATG ATAGGTACTG TCATCCCTGA TGCAGATAAA GGGACGGGTC 
    ATAAATAGAT TAAGGATCGA GTTCTTACCA CAAATATTCT GAATATGCAT 
    GTATGAGAAG GAGTCTTGGG GTAATTAATT AAGGTATAAC GGATCCTAAT 
    ATGGGCACCA TGAAAGAGAG GACCCTAAAT TTGCCAAACT AAGGACGATG 
    CATGCCATTC TACACACTCA TACAACACAA GTAGTGTAAG CCTTAGCTAT 
    TTCATGCGAT AAAATAAACG GCAATTAGCA GCCAATTAAC ATAGGCACAA 
    AAGGTACATT AATAAGAAAG ATGCTTCAGT TCCCAATTCA TACATCCGTT 
    TGTGAGAAGC TGTGTTAGGA GTATACTGCA CTGTATCTGG CATCTTATAT 
    ATCTATGTAT AATGTTCATA TAATGATACT ATTTCTTTAT CTCATTAAAC 
    CATATCACCT CAATTGTCTT TGACACTTAG ATGATTAATT TATGGTCCAA 
    ATTATTTTTA TCATTTTCTT TCTCATACGA AGTTATATCA CCTTAGTTTT 
    GTCTTTAGAT GATTAATCTA TATTATTTCT CCTTTTTTTT ATTTTGTCGT 
    TGAGGCATAT CACCTTAGTT TTACTTTTTA ATGATCAATT TATATATGAT 
    TTAAATTATT AAAAATCACG CCATCTAAAC TATTTTTAAC TTTTTTCATG 
    GTCGATCAAA GATGAAAATT ATATAAAATT ACGTCATCCG TCATCTAGCT 
    ATTTTTACAT GTTATTTGTT CTATTATTAT ACAGAACTTC CGCTGCGATG 
    CGCGGGCCCA ATCTAACTCC CATCTCCTTG CAGAACTCGA TCGATAAAAA 
    TTAATTAATG TTGTCAATTA GCTAATTACG TCGCATGCGG GAGTCATCGC 
    ACGGCCAAAT ATCTAAAAAA ACATGTAATA GTCCTTTCAT TTCAGTAAAT 
    AAACACATCT ATATTTTTTT AATCTATATA TTAGATTGAG AAATGGAAAT 
    TGGTTAGTCA GTACTCCCTC CGTCCCCTAG TATAAGGGAT AGACTAGTAC 
    TCCATCCGTT TCATAATGTA AGTCATTCTA GCATTTTCTA CATTTATATT 
    GATGTTAATG AATCTAGACA TATATATCTA TCTAGATTCA TTAACATCAA 
    TATGAATGTG GGAAATATTA GAATGACTTA CATGGTGAAA CGGAGGAAGT 
    ATATAGGAGG ACACCATGAA TATAACTCTC TGGTTTTGCG GAGCTTCTGA 
    TCTGTTGGAG ATCAGAACTA CAAACAGGCA TTTTTGTGTG ATTTGGATGT 
    ACACATGCCA AAACTGATCG ACGATATATA TATGAATGCG CATATGCATG 
    CATGCAGGAG CTACTTCAGG TGCACGCACA GCAACTGCCG CGTGAAGAAG 
    CGGGTGGAGC GGCTGTCGAC GGACTGCCGC ATGGTGATCA CCACCTACGA 
    GGGCCGCCAC ACGCACTCCC CCTGCGACGA CAACTCCTCC GGCGAGCACA 
    CCAACTGCTT CAGCTCCTTC TGAAGATTTT AGCACTTTGC ATTTTCGTCG 
    TTGATCCATC CATCAATATA TATACCGTCG TATACCTATA TGTCCACCGT 
    TTGATCGATT AACTGTGGCT AGCTCTAGCT CTCTTTCATT TTGATGGTTG 
    AGATATATAG GCGACGTAAT ATCGAGCCAT GCCTGCGCAA TGTACCAGTA 
    CTGCTAGCTA TACGTGAGAT GTATTGCGTG CATGCACGTA CAATTTACAA 
    GCAGCAGTCA ATAAATTAAG CTATGTATTT CTTCT

    Gene models with high sequence identity

    1. AT2G44745.1 [+] show detail - WRKY family transcription factor
      E-value: 1e-21; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA-binding WRKY 5.5e-09
    HMMPfam DNA-binding WRKY 1.8e-14
    Gene3D no description 1.1e-08
    Gene3D no description 6.5e-09
    HMMSmart DNA-binding WRKY 0.00064
    HMMSmart DNA-binding WRKY 7.9e-10
    ProfileScan DNA-binding WRKY 13.035
    ProfileScan DNA-binding WRKY 15.48

    See the detailed result >

    AT2G44745.1

    Model type
    Protein coding
    Short Description
    WRKY family transcription factor
    Computational Description
    WRKY family transcription factor; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 13 (TAIR:AT4G39410.1); Has 3506 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3483; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR