K35803

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35803

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35803

Determination of introduced cDNA(s)

  • J013156E05 - Rice Full-length cDNAs - Original: J013156E05

    full reading [+] show sequence

    Nucleotide sequence: J013156E05 - full reading 
    GACCACCCTC CTTCCTTCCT TCCTTCCCCT TCTCTCTCTC TCTCTCCCCC 
    TCCCTCCGAT CTCGCCGCGT CCGTGTCCCC TCGCCGCCGC AGCCAGCGTC 
    GAGGGCTCGG CGACCGGAGG AGGAGAGGCC GGAACCCGCC GCCGCCGCCG 
    CCGCCTCCGC CTGTAGCGAG ATCGCTCGAT CCGGTTCGCC TCCCGCGCGC 
    CAGTCCGCCA GCCCAGTTCG ATCCGTTGAG GGGGAGGGGA CGCTCTAGTG 
    TGGGGATTGG GGGAATCGAT GGCGGCGCCG CCGGCGAGGG CTCGGGCCGA 
    CTACGATTAC CTCATCAAGC TGCTCCTCAT CGGCGACAGC GGTGTTGGGA 
    AAAGTTGTCT CCTCCTACGG TTCTCTGATG GTTCCTTCAC CACCAGTTTT 
    ATTACCACCA TCGGGATTGA TTTCAAAATA AGAACAATCG AACTGGATGG 
    TAAACGGATT AAACTTCAAA TCTGGGATAC AGCTGGTCAA GAACGTTTCC 
    GAACTATTAC AACTGCCTAC TACAGGGGAG CAATGGGTAT TTTGCTTGTT 
    TATGATGTCA CCGACGAGTC ATCATTTAAT AATATAAGAA ACTGGATTAG 
    GAACATAGAG CAACATGCTT CCGATAATGT GAACAAGATT TTGGTAGGCA 
    ACAAAGCTGA CATGGATGAA AGCAAAAGGG CCGTACCAAC TTCAAAGGGG 
    CAAGCACTTG CTGATGAATA TGGCATCAAG TTCTTTGAAA CGAGTGCAAA 
    GACAAACCTG AATGTCGAGC AGGTTTTCTT TTCAATAGCA AGGGATATTA 
    AGCAAAGACT TGCGGAGACT GATTCCAAGA CTGAGGATCG CACGATCAAG 
    ATCAACAAAC CAGAGGGTGA TGCTGAGGCC ACAACTTTGC AGAAATCTGC 
    ATGCTGTGGA TCGTGAGTGT TATGTTGTCG GATGGAAGAT AAAATAGTGA 
    TCATAGTATC ATACAACGCT TGTAACTTTT ATCCTTTGCC TTTCTTGTGA 
    CCTATCCTCG TGCCTCCTTT ACGTTAAAAT TGCAATTGCT GGTATTCGGA 
    CTTCTGTGTT CAGTTGTGAC TTACACTGGT AAAAAAAAGT AACTTTGCTG 
    TAGCACAATA AGATTGGTGG AGCTGATGTT ACGGTTTCCA GAAGTTGTCC 
    ATCAGGAGAC TACTGGGTAG CCATTTCAGT TCAGTTATTA TAGGAGTAAA 
    GGGCAGGGCA TGCAATTCTT TCGACCATTA TTACTGGGTT CCATAGGTTT 
    CTTTATTTCT TGATTCGTCG TGTAACAGCA TATATTCCTG TAGTGAGACA 
    TACGTGCCAC TCTCCGTACA AGGTTGC

    Gene models with high sequence identity

    1. AT5G59840.1 [+] show detail - Ras-related small GTP-binding family protein
      E-value: 1e-85; Score: 313.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart ADP-ribosylation factor 0.0028
    HMMSmart Ras small GTPase, Rab type 7.8e-107
    HMMSmart Ras small GTPase, Ras type 3.8e-35
    HMMSmart Small GTPase, Rho type 4.4e-14
    HMMSmart Ran GTPase 4e-07
    superfamily P-loop containing nucleoside triphosphate hyd 4.8e-67
    Gene3D no description 4.6e-67
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    FPrintScan Ras GTPase 1.6e-46
    HMMPfam Ras 1.8e-66
    ProfileScan Small GTPase 38.25
    HMMPanther RAS-LIKE GTP-BINDING PROTEIN 5.5e-103
    HMMPanther RAS-RELATED GTPASE 5.5e-103
    HMMTigr Small GTP-binding protein 7.2e-31

    See the detailed result >

    AT5G59840.1

    Model type
    Protein coding
    Short Description
    Ras-related small GTP-binding family protein
    Computational Description
    Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR