K35812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35812

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35812

Determination of introduced cDNA(s)

  • J013070M10 - Rice Full-length cDNAs - Original: J013070M10

    full reading [+] show sequence

    Nucleotide sequence: J013070M10 - full reading 
    GATACAGCCT AGAACAACTG CTTGCCAAAA AAGGAAAAGA AAAGAAAACA 
    CTTAGTGCAG AAACTGGGAA TTGCAATGGC GGGAGCAAGA TCCGTTGGTT 
    CTCTCCCAGT GCCTAATGTG CAGGCGCTTG CAGAAATTTG CAATGATCCA 
    GATGAACACA TACCTGAAAG GTACATCAGA CCAGAGGCTA GTTCTGAGGA 
    GGTCATCAAC AACTACCAAG GTGACATGGC GATTCCGATC ATCGATCTCA 
    AGAAATTGCT TTGTCCGCAA TCATCAGAAG AGGAGTGTGT GAAGCTGAGA 
    TCTGCCTGCC AGTATTGGGG GTTCTTTCTG CTCATTAACC ATGGAGTGCC 
    AGATGAAGTG ATTGCAAACC TGAAGAGAGA CATTGTTGAT TTCTTTAGCC 
    AGCCACTGGA CACCAAGAAG GAGTACACAC AGCTACCGAA TAGCCTAGAA 
    GGCTATGGAC AGAGCTTTGT TTTCTCTGAG GACCAGAAAC TTGACTGGGC 
    AGACATGCTG TATCTTCATG TCCATCCTAG CGATTCAAGG GACCTAAGGT 
    TCTGGCCCAC TTCTCCAGCA TCTTTCAGGC AATCCATTGA TGCATACTCA 
    TCAGAGACTA AAAGCCTGGC ACTCTGCTTG TTTGAGTTCA TGGCTAAGGC 
    TGTGGGCGCT AAGCCAGAGT CACTTTTAGA TTTATTTGAA GAGCAGCCTC 
    GAGGCTTAAG GATGGCCTAT TACCCACCAT GCCGGCAAGC TGACAAGGTG 
    ATGGGCCTTT CGCCACACTC TGATGCGGGT GGCCTGACAC TGCTGCTCGA 
    GATTAACAAT GTGCAGGGCC TGCAGATCAA GAAAGATGGC AAGTGGTTCT 
    CCATAGATGC TCCAAATGGT GCACTTATTG CTAACATTGG CGACACACTT 
    GAGGTAATGA CCAATAACAA ATTATGCTTT CACATGTCGA AGGACCTTGA 
    TGTATTTGGA TGAGTTCAAT AAAAGCTCCT ATTATCTAGA AAACTTGTCA 
    AAGCACCAAA CAAAATACCT AAGTTCAAAT TATTTATATT CTTGAGTC

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 8e-67; Score: 251.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 2.4e-13
    superfamily Clavaminate synthase-like 2.4e-71
    Gene3D no description 8.7e-71
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 7.4e-144
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 7.4e-144

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR