K35815

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35815

Determination of introduced cDNA(s)

  • J023031G24 - Rice Full-length cDNAs - Original: J023031G24

    full reading [+] show sequence

    Nucleotide sequence: J023031G24 - full reading 
    GATTCCCCCC TTTCTTCTCT AGGTTTTATG GGCTTCATGG TTCATCAGTT 
    TCTTCTATTT TGTTTGTTCC ATTGTTTTTG TATCTTTCCT TCTTGCAAGT 
    TTTAGTTCAC AGAATTTTTG GGTTTTCCAA TAAAGAGTAG GTGCATATTA 
    GTCAGCAATT TTTTTATGAA AGCTCTCATT GGTGTTTTCA TCTCTTCTGT 
    TGAATGCAGT GGGCTCATTA GTTGGAGTCT TCATCGGCGC GTTCATGGGG 
    ATGTCCACGG AAAGCGGCAT GCTACGAGGC GCAGGCGTCG GGGTGGTCTC 
    CGGCGCGGTC TTCTCCATCG AGGCCGTCGA ATCGTGCATC GAAATCTGGA 
    GATCAAGTGA ATCAGGAAAA TACAGCATTA TCTTCGTGCT TGACATCATC 
    TCTAGCCTCT TCAGTGGAAG GATTGTGTGG GAGAAGGTCA GCCCAGCACT 
    GCAGCGCGCG GTGCAGAGTC AGATGAGTCT ACTGAGTACA CCATTCATTG 
    ACAACAATGA CCTTTTTGAA ACCGGAAATA CAGGAGGCAT GTCAAGAGAT 
    CTAATTAACA GAATCCCAAA GACCACATTC AGCGCTGCAA CCAATCCTGA 
    TCAGGAAACT GATAACTGTT GTGCAGTTTG CCTTCAGGAT TTTGGAGCAT 
    CGCAATTTGT TCGGGTCCTG CCTCATTGCC AGCACACGTT CCACGCACGA 
    TGCATCGACA ACTGGCTTTT CAGGCACGCA TCATGCCCGC TATGCAGGGC 
    TGGTGTGCAT ATAGACCATA TACATATGTA AAATAGAACT CGCAGCGCAC 
    CTGGTGTATT TTCAGGCGAA TACCCGTGCC CGCGGTCCGT ATCATAAGTA 
    TAGTCTTGTA CACATAGGAG GCCTTTTTTT CTTCCCAGTC TTTGTGTGGA 
    GCTATGTTCC AGCCGCACGT TTTTTTGTTA CAGCAATAAC AAGTTATGTA 
    CTAATATACA TTCTGAAAAA AAGAACTAAA CTAACAGTCT CTGAATTATG 
    GCTGTGTACT GGAGCCTC

    Gene models with high sequence identity

    1. AT2G17730.1 [+] show detail - NEP-interacting protein 2
      E-value: 8e-47; Score: 184.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.7e-14
    HMMSmart Zinc finger, RING-type 1.5e-07
    HMMPfam Zinc finger, C3HC4 RING-type 5e-06
    ProfileScan Zinc finger, RING-type 12.504
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.4e-19
    superfamily RING/U-box 1.2e-15

    See the detailed result >

    AT2G17730.1

    Model type
    Protein coding
    Short Description
    NEP-interacting protein 2
    Curator Summary
    Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.
    Computational Description
    NEP-interacting protein 2 (NIP2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G35840.1); Has 9242 Blast hits to 9216 proteins in 266 species: Archae - 0; Bacteria - 2; Metazoa - 2260; Fungi - 688; Plants - 5081; Viruses - 18; Other Eukaryotes - 1193 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR