K35828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35828

Determination of introduced cDNA(s)

  • J023055F24 - Rice Full-length cDNAs - Original: J023055F24

    full reading [+] show sequence

    Nucleotide sequence: J023055F24 - full reading
    GTCAGTCCGC ACCCGCGCGA GGCTTCCGCT CCGCTCCCCT CCGATCCGTG 
    GCCTCCTCAT CGCCCCTATT AAACGGGAAC CCAGCCCGGC GTCCCCTTCT
    CGGCTTCCTC CTCCACCATC CATCCATCCG CGCGCGGTGC GTAGTAGCGA
    GAAGAGAAGG GGGGGAGGGC AAAGCGATGG CTCCGATGAA GCTGTACGGG
    TCGACGCTGT CGTGGAACGT GACGAGGTGC GTGGCGGTGC TGGAGGAGGC
    CGGCGCCGAG TACGAGATCG TGCCGCTCGA TTTCTCCAAA GGCGAGCACA
    AGGCCCCCGA CCACCTCGCC AGGAACCCCT TTGGTCAGGT GCCGGCTTTG
    CAAGATGGTG ACTTGTTCCT CTGGGAATCA CGTGCAATTT GCAAGTATGT
    ATGCCGCAAG AACAAACCAG AGCTGTTGAA GGATGGCGAC CTCAAGGAGT
    CAGCAATGGT GGATGTGTGG CTTGAAGTGG AGTCCAACCA GTACACTCCT
    GCACTGAACC CCATTCTTTT TCAGTGCCTA ATCCGTCCGA TGATGTTTGG
    GGCACCCCCC GACGAGAAAG TTGTTGAGGA GAACCTTGAG AAGCTGAAGA
    AGGTGTTGGA GGTGTACGAG GCGCGCCTGA CGAAGTGCAA GTACCTGGCT
    GGAGACTACA TCAGTGTCGC GGACCTAAGC CATGTGGCTG GCACTGTATG
    CTTGGGGGCT ACTCCCCACG CATCCGTGTT GGACGCATAC CCGCATGTGA
    AGGCCTGGTG GACTGACCTG ATGGCAAGGC CGTCTTCCCA GAAGGTGGCT
    TCACTGATGA AGCCTCCTGC TTAAGGTAGT TGTTCTAGGC ACAGGTTTGT
    CGTCCATGGT CCACAGAATA AGCTGAGGTG TGCCCAGTTG GTTGCTCGTT
    TAAGGATTTG TGTTATTATG TGTGTCCTGG ATGTTGAATG TTCAAGCAAT
    CAGGATTGTG TTGTTATGCT GCATATGATC CAACCTAAGT CTTGTACTGC
    TATGAGCATT CTTGTGCTCT GGCCTTCGCT CTTGAGAACC TTATAATAAA
    TTCTGCTTTT AGTC

    Gene models with high sequence identity

    1. AT3G62760.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 2e-39; Score: 159.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 3.9e-74
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.9e-74
    Coil coiled-coil 0
    superfamily Glutathione S-transferase, C-terminal-like 3.7e-36
    superfamily Thioredoxin-like fold 3.4e-26
    Gene3D Thioredoxin fold 2.1e-24
    Gene3D Glutathione S-transferase, C-terminal-like 6.6e-41
    ProfileScan Glutathione S-transferase, N-terminal 25.086
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 25.752
    HMMPfam Glutathione S-transferase, N-terminal 2.5e-19
    HMMPfam Glutathione S-transferase, C-terminal 4.8e-17

    See the detailed result >

    AT3G62760.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Curator Summary
    Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    ATGSTF13; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2); Has 15143 Blast hits to 15132 proteins in 1449 species: Archae - 0; Bacteria - 8090; Metazoa - 2263; Fungi - 919; Plants - 1235; Viruses - 0; Other Eukaryotes - 2636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR