K35828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35828

Determination of introduced cDNA(s)

  • J023055F24 - Rice Full-length cDNAs - Original: J023055F24

    full reading [+] show sequence

    Nucleotide sequence: J023055F24 - full reading 
    GTCAGTCCGC ACCCGCGCGA GGCTTCCGCT CCGCTCCCCT CCGATCCGTG 
    GCCTCCTCAT CGCCCCTATT AAACGGGAAC CCAGCCCGGC GTCCCCTTCT 
    CGGCTTCCTC CTCCACCATC CATCCATCCG CGCGCGGTGC GTAGTAGCGA 
    GAAGAGAAGG GGGGGAGGGC AAAGCGATGG CTCCGATGAA GCTGTACGGG 
    TCGACGCTGT CGTGGAACGT GACGAGGTGC GTGGCGGTGC TGGAGGAGGC 
    CGGCGCCGAG TACGAGATCG TGCCGCTCGA TTTCTCCAAA GGCGAGCACA 
    AGGCCCCCGA CCACCTCGCC AGGAACCCCT TTGGTCAGGT GCCGGCTTTG 
    CAAGATGGTG ACTTGTTCCT CTGGGAATCA CGTGCAATTT GCAAGTATGT 
    ATGCCGCAAG AACAAACCAG AGCTGTTGAA GGATGGCGAC CTCAAGGAGT 
    CAGCAATGGT GGATGTGTGG CTTGAAGTGG AGTCCAACCA GTACACTCCT 
    GCACTGAACC CCATTCTTTT TCAGTGCCTA ATCCGTCCGA TGATGTTTGG 
    GGCACCCCCC GACGAGAAAG TTGTTGAGGA GAACCTTGAG AAGCTGAAGA 
    AGGTGTTGGA GGTGTACGAG GCGCGCCTGA CGAAGTGCAA GTACCTGGCT 
    GGAGACTACA TCAGTGTCGC GGACCTAAGC CATGTGGCTG GCACTGTATG 
    CTTGGGGGCT ACTCCCCACG CATCCGTGTT GGACGCATAC CCGCATGTGA 
    AGGCCTGGTG GACTGACCTG ATGGCAAGGC CGTCTTCCCA GAAGGTGGCT 
    TCACTGATGA AGCCTCCTGC TTAAGGTAGT TGTTCTAGGC ACAGGTTTGT 
    CGTCCATGGT CCACAGAATA AGCTGAGGTG TGCCCAGTTG GTTGCTCGTT 
    TAAGGATTTG TGTTATTATG TGTGTCCTGG ATGTTGAATG TTCAAGCAAT 
    CAGGATTGTG TTGTTATGCT GCATATGATC CAACCTAAGT CTTGTACTGC 
    TATGAGCATT CTTGTGCTCT GGCCTTCGCT CTTGAGAACC TTATAATAAA 
    TTCTGCTTTT AGTC

    Gene models with high sequence identity

    1. AT3G62760.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 2e-39; Score: 159.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 3.9e-74
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.9e-74
    Coil coiled-coil 0
    superfamily Glutathione S-transferase, C-terminal-like 3.7e-36
    superfamily Thioredoxin-like fold 3.4e-26
    Gene3D Thioredoxin fold 2.1e-24
    Gene3D Glutathione S-transferase, C-terminal-like 6.6e-41
    ProfileScan Glutathione S-transferase, N-terminal 25.086
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 25.752
    HMMPfam Glutathione S-transferase, N-terminal 2.5e-19
    HMMPfam Glutathione S-transferase, C-terminal 4.8e-17

    See the detailed result >

    AT3G62760.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Curator Summary
    Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    ATGSTF13; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2); Has 15143 Blast hits to 15132 proteins in 1449 species: Archae - 0; Bacteria - 8090; Metazoa - 2263; Fungi - 919; Plants - 1235; Viruses - 0; Other Eukaryotes - 2636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR