K35833

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35833

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35833

Determination of introduced cDNA(s)

  • J033050A17 - Rice Full-length cDNAs - Original: J033050A17

    full reading [+] show sequence

    Nucleotide sequence: J033050A17 - full reading
    GGCTGTTTTC TTTTTCTTCT TCTCGCTGAG CTCTACTACT GCACTACACT 
    ACCACTCTCT TCGCGTTCTC TCTCGCTGCA ATGGAGGCGT AGTGTTGGGA
    GGAGGGAGGG AGAGAGAGAG GGAGAGAGGG AGCTAGGGTT TTTGGGCCGC
    CGCTGCCTCC TTGAGTTCGT CGTCCCTCCG GCTCCGAACC CTTGGGCGTG
    CGGCAGTGTA GGCTCCAATG GGGAAGTCTC CGGCGAAGTG GATCAAATCC
    GTGCTCTTCG GGAAGAAGTC ATCGAGGTCC GGCTCTACCA AGGCGAAAGA
    TTTATCGAAG GGCTCGAACA ACAAAGGGTA TGCTGCTGCT GGGAAGGATG
    CTGGGTTTGA GAGCTCCCCG GTGATATCGG AGCCGGTGCT CGTTACACCT
    CATAACAATG AGGCTGTCCA GGAGGTTGGG AGGGGTGAGA ATTCCAGCTT
    ACAAGGTGAA GTGGTGGTGC GCGATGTCAG TCAAGACCTG GAGAAGCAGA
    ATACTGTCGT TTCCGATGCG TCCAACGACC CCGAGAGGTT GAGAGAGGAA
    CAAGCGGCCG TCAAGGCACA AGCTGCCTTC CGAGGCTATC TGGCACGTCG
    GGCATTCCGT GCGTTGAAAG GAATCATAAG ACTCCAAGCC CTGATTCGTG
    GGCATCTCGT AAGGAGGCAA GCCGTTGCAA CTCTTCGTGC AACATGGTTG
    ATTGTGAAGT TTCAAGCTCT AGTCCGTGGT AGGAATGTCA GACTTTCTAC
    TAATACCATT CAAGTCAACT GGAAGCTTGT TCAACAACAG TCGGGGAGTG
    GTAAGCGGGA TGCATGGAAG GAGAAATTGT CTTCAAATGC ATTTGCTCGT
    AAGCTTTTCG CTTCACCAAT TCTGGTAGAG GCTCTCCATT TTCAATATGA
    TGAGAGGGAT ACAAATTCAG CCTTCAACTG GTTGGAGAGA TGGACCATAG
    GTCGTGTCTG GAGGCCCATT TCACATCCAA AGAGAGCTGC TGTTACTGAT
    GCCAAGCCAC ACACAAGGAA GGCCAGTTAT GCAATGGAAA CAGAGTCAGG
    GAAGTTGAAG CGCAATTCTC GGAGAAGTTC TGCTGCACCA GTTGAGTCCT
    CTCAGACGAA CATAGCCATG GAAACTGAAA AATCAAGGCG AAACCCAAGG
    AAATTCACTA GCTCTACTGC TGATTCAGTG CCCGAAAGTC AGTTAACTGA
    ACTTGAGAAG GTCAAACGTA ACCTTAGGAA GGTAACTAAT TCTATGGCTG
    AGGCTTCAAA GGTATCTACT CCTGCAACTG AGATCCCTGA ACGCCAAGAG
    GTCCAATGTG AGAAACCACA GCGAACTGCA GAAGAAGTTC CAAATTATCC
    TGAGATCCAA GAACCTCAGA ATGGTAATCT GTTGGAAAAT GCTAAGACGG
    ATATCCTGGT ACCTGATCTT CAACCTGAAC CGGAGGTTCC TTCTTATCAA
    GTTGAAACTG AAGAAAAAGT TGCTGAACTG ACTGTTGCTG ACCCTACGGT
    AGAAACTATG CCGCTGCAAG ATATCCACAA TGAAGAAAAT GCTTTAGTAA
    ATGATATGGA ACAGAGATCC AAAGAAGAAC CTCTTTCTAC TGAGAGCCTT
    AAAAGCAGCA AGAGGAGGTC TTCATTCTCA ACCAAGACAG AGTATCCAGA
    AAATGGTTCA AAGAATTCGC CTGCTGTTCC CAGCTACATG GCTGCAACAC
    AATCTGCGAA GGCGAAACTG CGGGGACAGA ATTCACCCAG ACTTAGTTCT
    GACTCTGCGG AGAAAAATGG CTTCACCAGG CGCCATTCCC TCCCATCCTC
    TAATGGTAAG TTGAACTCGC ACTCGCCGCG TACACAAAGG CCAACCCATG
    CTGGTGGCAA AGAGGGAGTG AAGGCTGACA AGTCTATGCT ATCATCAAGA
    GACGCAAGTG AAAGACCTGC CAAAGCTGAA TGGAAACGCT GAAGAGTTCA
    TCGATCGAGC ACCAAATCCT CCTGTTGGGT TGCGCAACAT TCGGGTGGAT
    GACGACGATG ATGGCGTCTG CAGTTTGATC CAATTGTTTT GCTTCCGATG
    TAAAAAAGAT GTTCTCCCCA TCCGTGACAG TGAACCAGCT GCTTTGTTGT
    GGTTTGTATC TGGTGCGATT TGACTTATTT CTATAGGGTT TTTGCGTCCT
    TTCCTCTGCC ATGTTCATGT ATAGCTGAAG CGTTTCCGGT TTGCTTTCGA
    TTTCCCTGCC TCCCCGAGAC ACCCTGCTTT TGTTGAGCAA GAGAGCTGCT
    GATGTTAGAG AGAACTTGTT GGATTGAACA ATCTTATCCC ATTTGGACAT
    CTCTTCTGCG TTTTCTTCTT ATAACTGACT AGCGAGTTGT GCCATTCC

    Gene models with high sequence identity

    1. AT1G74690.1 [+] show detail - IQ-domain 31
      E-value: 3e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart IQ calmodulin-binding region 1.3e-05
    HMMSmart IQ calmodulin-binding region 24
    HMMPfam IQ calmodulin-binding region 3.4e-05
    HMMPfam IQ calmodulin-binding region 0.002
    HMMPanther MYOSIN-IX 0.00016
    HMMPanther MYOSIN 0.00016
    ProfileScan IQ calmodulin-binding region 10.859
    ProfileScan IQ calmodulin-binding region 8.37
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 7.8e-06

    See the detailed result >

    AT1G74690.1

    Model type
    Protein coding
    Short Description
    IQ-domain 31
    Computational Description
    IQ-domain 31 (IQD31); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 30 (TAIR:AT1G18840.2); Has 8498 Blast hits to 6418 proteins in 674 species: Archae - 21; Bacteria - 823; Metazoa - 3400; Fungi - 838; Plants - 1044; Viruses - 44; Other Eukaryotes - 2328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR