K35928

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35928

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35928

Determination of introduced cDNA(s)

  • J023117M08 - Rice Full-length cDNAs - Original: J023117M08

    full reading [+] show sequence

    Nucleotide sequence: J023117M08 - full reading
    GACTGCTAGT GCTGCTAGCC TGAGTAGTTT CGTGTGTCTG AGGATCTCCT 
    GATCTCCTCC CTCCCTCTCT CTCTCTCCAT CCCCATCCAT CCTCCTTTTC
    CTCCTATTCC CCTGTGGAAT CTCATCTTCT TCTTCATTCC ACTTCTCTTC
    TCTCTCGTGG TCGCATGATC TCATCAGGAG CGCAGATGCT ACGGCGTCCT
    TGAGAATTGC AGAGAGGCAA AAGAAGAACA AGCAGAGAGC AAGAACAAGC
    AGAAGCAGAA GCAAAGAGGC GATGGACGGC GACACGCTGT CGGCGGCGGC
    GGCGGAGGAC GGGAAGGTGC TGCACGCGTT CCAGACGAGC TTCGTGCAGG
    TGCAGAGCTT GCTGGACCAG AACCGGGTGC TGATCAACGA GATCAACCAG
    AACCACGAGT CCAAGGTCCC CGGCGACCTC TCCCGCAACG TCGGCCTCAT
    CCGCGAGCTC AACAACAACA TCCGCCGCGT CGTCGACCTC TACGCCGACC
    TCTCCTCCCT CTTCGCCGCC TCCTCCCCCG GCCCCGCCGC CTCCGAGGGC
    GCCTCCGTCG GCACCGCCGT CCGCCACGCC GGCCACAAGC GTGTCAGGTC
    CACCCACCTC GACTGAACAA GAACCATTCT CATTTTCTCA ATTAACCACC
    TCCAATTCTC CAATTCCAAT TCCAATTTCG GCTAGCTTAG CTTAAAGATC
    GAGCTCTTGC TTGCTTGTAT ATCTAGCTAT AATCTATAAA TCTACATATG
    AGCAATTAAC GCCCCCTCAC AACTACTCCC GATGTTTCAT ATTATAAGAC
    TTTCTAACAT TTGCCTACAT TCATATATAT GTTAATGAAT CTAGACACAT
    ATGTGTGCCT AGATTCATTA ACATCTGTAT GAATGTGGGT AATGCTAGAA
    AGTCTTATAA CCTAAAACGG AGGTAGTACA ATCATCTTCG GTTCTTTCTT
    GTAGCTGTTG TTTCATCTTG TTGTAGCTGA TATGATGAGC TATTATATGG
    ATTTTGATGC AACAATGCCA ATACAAGAGA GTGAGCACTT CTCCG

    Gene models with high sequence identity

    1. AT2G06255.1 [+] show detail - ELF4-like 3
      E-value: 1e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF1313 1.3e-39

    See the detailed result >

    AT2G06255.1

    Model type
    Protein coding
    Short Description
    ELF4-like 3
    Computational Description
    ELF4-like 3 (ELF4-L3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 4 (TAIR:AT1G17455.2); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR