K35935

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35935

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35935

Determination of introduced cDNA(s)

  • J013026O16 - Rice Full-length cDNAs - Original: J013026O16

    full reading [+] show sequence

    Nucleotide sequence: J013026O16 - full reading 
    GACACACCCA CCTCCATTTC CCTCCCATTT CTTTCCTTCT CCGCAGATAT 
    TCCCCAAGAA TCTCCTCCTC CTCCTCGGAT TCCCCTCTCT CTCTCCTCCT 
    ACAGAGTAGT AGCTTGTGCT TGCTTTGCTC CGATTCTCTC TCTTCCCTGT 
    CTCTCCTAGC TGCAATATAC CACTAGCAGC AGGGCGCCCA GTTGCGCGAT 
    CGATCGATCG AGCTCCGTGG TGCCAAGAAC GCCCTGTACG GCGCGCCGGT 
    ATGTGCGTGG AGGAGTCGGA GGGCGCGGAG AGGCTGGATT TTGGGGAGCC 
    CGCCGCCGCC GCCGCCGACG CCGGGAAGAG CAAGAGCAAG AGCCCCGACG 
    AACTCCCCTC GCCTCGGATG GAAAGAGTTT GTGAGAACAC TACAGCTGCT 
    GATTTCAAGC AAAATAAGTC TGGTAATTTT GTCCCAAATA TTCGATCTGG 
    GGATTGGTCG GATATTGGAG GTCGTCAATA CATGGAAGAT ACCCATGTGT 
    GTATTACTGA CCTAGCTAAG AACTTTGGTT ATCAATCGGT GGATAATGAA 
    GCTATTTCCT TTTATGGGGT CTTTGATGGG CATGGTGGAA AAGATGCTGC 
    CCATTTTGTT CGTGATAATT TACCAAGGAT CATTGTGGAA GATGCTGATT 
    TTCCTCTTGA GCTTGAGAAA GTAGTAAGAA GATCCTTTGT TCATGCAGAT 
    AATCAGTTTG CAAAGACAAC ACTGTCTTCT GGCACAACAG CACTTACAGC 
    AATGATTTTC GGAAGGACTC TTCTGATTGC AAATGCTGGA GATTGTAGGG 
    CGGTTCTTTC ACGGTGCGGC ACTGCAATTG AAATGTCAGT GGACCACAGG 
    CCTTGCAGCC TCAGCGAAAA ACTGCGTGTA GAATCACTTG GTGGCTATGT 
    CGACGATGGT TACCTCAACG GTTTGTTAGG AGTCACTAGA GCACTCGGTG 
    ACTGGCATCT TGAGGGCATG AAAGAAGCTG GCAATCCAGG AGGTCCACTT 
    AGTGCTGAAC CAGAGCTAAA GATGATCACA CTGACAAAGG ACGACGAGTT 
    CTTGATAATT GGCAGCGACG GGATCTGGGA CGTCTTCTCA AACCAAAACG 
    TGGTGGACTT TGCACGGAGG CGCCTCCAAG AACACAACGA TGTGAAGTCC 
    TGCTGCAGGG AGATCGTTGA GGAGGCAATA AAGCGAGGCG CCACCGACAA 
    CTTAACCGCG GTGTTGGTCT CCTTCCACCT GGAGGCTCCT CCCCAGGTCA 
    GAGTGAGCCG ACCCGGTAGG GTGGCGCGCA GCATTTCGGC TGAGGGGCTG 
    AACAGCTTGA GGACACTCCT GAGAAACCAA TGATGGCCAT CTTCTTTGCA 
    TTCTTGCTGC AATTTCTCTA GTATGTTGCA TTGCCGAGTG TTAATTGTAT 
    GTAGTGATCT CGGCACCTCA TTGTTGTTAG ATGTTACCAC CATTGTTGTG 
    ATGACACCAG CTATTATTCT TGTTGGTAAT TAAGCCAACG AACATGAGTT 
    CTGAGCTCTC AAATTGTGAG AAATTCTAAG CGGCTGTAAC AAGTTGAGCT 
    CTGTGAAGAA AGAAGTGAGT GCCCAAGCTC ACAGTGTCAT ATTTTTCTCC 
    TATTCTTGTC TGTAAATAAA AATGTCAGCT ACTCAGCTCC TGGGTAATTG 
    AACGTTGACC ATGTAAAAGA TACCCCCATT GAGTGAAATT GCCGCCAATT 
    GGCTCATCTT TTC

    Gene models with high sequence identity

    1. AT2G25620.1 [+] show detail - DNA-binding protein phosphatase 1
      E-value: 2e-85; Score: 313.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Protein phosphatase 2C-related 5.1e-86
    HMMSmart Protein phosphatase 2C-related 0.0044
    HMMPfam Protein phosphatase 2C, N-terminal 8.1e-66
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    superfamily Protein phosphatase 2C-related 2.4e-76
    Gene3D Protein phosphatase 2C-related 3.4e-74
    HMMPanther PROTEIN PHOSPHATASE 2C 1.6e-129
    HMMPanther Protein phosphatase 2C 1.6e-129

    See the detailed result >

    AT2G25620.1

    Model type
    Protein coding
    Short Description
    DNA-binding protein phosphatase 1
    Curator Summary
    Encodes DBP1, a member of the DBP factors (DNA-binding protein phosphatases) featuring sequence-specific DNA-binding and protein phosphatase activity. DBP1 is involved in plant-potyvirus interactions. Loss-of-function of DBP1 renders resistance to potyviruses.
    Computational Description
    DNA-binding protein phosphatase 1 (DBP1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: regulation of defense response to virus; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G33700.1); Has 7196 Blast hits to 7030 proteins in 671 species: Archae - 12; Bacteria - 774; Metazoa - 1729; Fungi - 719; Plants - 2627; Viruses - 7; Other Eukaryotes - 1328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR