K35936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35936

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35936

Determination of introduced cDNA(s)

  • J023064J03 - Rice Full-length cDNAs - Original: J023064J03

    full reading [+] show sequence

    Nucleotide sequence: J023064J03 - full reading
    GTTTTTTCAA CAATCCTCAA CCTTCGGAGG CTAGTTTGGC AGAAGAATCA 
    ATTTCTACAA ATGGTCAACA GATCGAGCAG GAAATGCCTG TAAATGTTGA
    ACCATCAGAT CTATCAGTTG ACAAAAGTAT TCAACATGCA CTGGTAGTTG
    GTGATTATAA AGGAGCAGTC AATCTGTGCC TTGCTGCCAA TCGAATGGCT
    GATGCTCTGG TTATTGCCCA TGCTGGTGGT TCTGCTCTAT GGGAAAGCAC
    AAGAAACCAG TATCTTAAGA ATACTGTATC ACCCTATCTA AAGGTTGTTT
    CTGCTATGGT TGGCAATGAT TTGATGAGTT TTGTGAGTAC ATGGCCATTG
    AATGCTTGGA AGGAAACACT TGCGCTACTG TGCACATTTG CCAGGAAAGA
    GGAATGGAAT GTTCTATGCG ATACCCTTGC ATCTAGACTG TTGGGAGTTG
    GAGATACACT AGCTGCGACT CTCTGTTATA TTTGTGCTGG AAATATCGAC
    AAAGCTGTGG AAATATGGTC TCGCGACTTG AAGTCTGAAG ATGGTGGGAA
    GACTTATGTT GATCTTCTCC AGGATTTGAT GGAGAAGACC ATTACTCTTG
    CCCTTGCTAC AGGGCATAAG AGCTTTAGCG CGTCACTGTC TAAGCTTGTG
    GAAAACTATG CAGAACTTTT GGCCAGTCAA GGCCTTCTTA AAACTGCAAT
    GGAATACTTA AAATTGTTGG GATCAGATGA ACATTCACAC GAGCTGGCAA
    TATTGAGAGA CCGGATTGCA TTTTCTACAG AAGAGAATCA TGCTGCCAGT
    ACTTCAGTTC ATGCGGGCAG TATTAACAGT TCCGCGTACC CTACAATTCA
    ACCGAGCTAT AGCACCCCAG ACCCTTCTCA GAACCTTTAC CAGGGGACTT
    CACAATATGC TGTGCCAAGT AACCAGTATC AAGATTACCA GCAACAATCT
    AATACAGCAT ATGGAACATA CAACAGTACA TATTCTCAAC AACCAACCCA
    GATGTTTGTT CCATCAAACA CCACTCCAGT GATCTCCCAG CCAAATGCAA
    CTCCAGCACC AGTTCCACAA CAACCAGTGA AGGCATTTAC TCCTACCAAC
    TTGCCAGGTC TAAAAAATCC TGAGCAATAC CAGCAACCAA CTTTGGGCTC
    CCAGCTTTAT GCGGGTGCTA ATCCACCATA TACTTCTGGA CAATCGACTC
    CATATCAAGG TGTACCTCCC ACCACATACC ATCAGCCTAG ACCACCTACA
    CAATTCCAAA CAGTTCCCAC AGCACCTCCA GCTGTTTCTA GTGCCACTGT
    ACCAGGAACG ACCCCAAGTC AGATGTTCCC TGGTCCAGTT GCTAATAACC
    CGACTTCCAG GTTTATGCCA TCAAACAATC CAGGTTTTGT TCAAAGGCCA
    GGTTTGAGTC CTGTACAGCC CTCAAGTCCA ACACAGGCAC AAGGACAACC
    GCAGCCTGTT GTTGCACCTC CTGCACCTCC CGCAACTGTG CAGACAGCTG
    ACACATCGAA GGTGTCTGCT GAGTTGAAAC CAGTTATTGC TACATTGACT
    AGACTATTTG ATGAAACATC TAAAGCTATG GGTGGATCAC AAGTTAAAAA
    ACGTGAAATC GAAGACAACT CAAGAAAGAT CGGAACACTA TTTGCAAAAC
    TCAATTCTGG GGATATATCT CCAAACGTTT CATCAAAACT CATTCAGCTT
    TGCAGTGCAC TTGATAGCGG TGATTTTGCC ACTGCGATGC ACCTTCAGGT
    ACTTCTGACA ACGAGCGACT GGGACGAGTG CAACTTCTGG CTTGCCGCAT
    TGAAGCGTAT GATCAAGACG AGGCAGAATT TCAGAATGTA AACGAGTGCC
    GCGTTTTGCA GCTAGTTCTG TATACACACA CCTTTTCGAC TTCTTACAAA
    AGTTGTTAGT GTTAGCAACT TATGAGGGTT TGTCTGCACA GTAGTGCTAT
    CTTGCTTCTT GTGTTCCCTC CTGCCAATTA TACTGAAGCT TGTCGCTTAA
    AAGTGGTCTG TTGTCTGGGC GATTACTTTT TGATAGTTCT TCGACATTCC
    TTTGTGAGGA TCAGTTCTTG GGTGATGGTG GTTGGATTTC ACGAGGATTA
    CTTGTAAGTG GGCATCTAGT TGTTATAGCT GGCCCATTTT GTTTTACCTT
    ATAAGTTAGA TTTTACCTGT TTGGACATTG GAAGTACTCT CGATAATTAA
    TACAAGGATA TTGGCTTGTT TATTGC

    Gene models with high sequence identity

    1. AT3G63460.3 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 8e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SEC31 4e-208
    HMMPanther SEC31-RELATED PROTEIN 4e-208
    HMMPfam SRA1 0.0000002

    See the detailed result >

    AT3G63460.3

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
    Link
    InterPro Scan - TAIR