K35943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35943

Determination of introduced cDNA(s)

  • J013128A09 - Rice Full-length cDNAs - Original: J013128A09

    full reading [+] show sequence

    Nucleotide sequence: J013128A09 - full reading 
    GACCCCCTCC TGGCTTAGCT TCCCTTCTCA CTCGCACGCG CCGCCGCCAC 
    AGAGCTCAGC TTAGCTCGAA GCTACTCCGT CTCGAGGTAG CTAGCTAGCT 
    AAGCCTTCAT CCATGGCGTC AGGAGAAGCA GAGCCACTGC AGTACACGAC 
    CACCGTGCTC CGAGTGTCGA TCCACTGCGA GGGTTGCAAG AAGAAGGTCA 
    AGAAGGTGCT CCAGAACATC GAAGGCGTGT ACAAGGTGAC AATCGACGCG 
    GCGAAGCAGA AGCTCGACGA GGTCGCCGCC GCGCCGCCAC CAGCTGCTGC 
    TCCGGCGCCG GCCGGGGAGC GCGGGAAGGG CGCGGAGAAG AAGGCGAAGG 
    AGGCGGCGAA GGAAGCTGGG ACTGAGGGCT CGGAGAAGAA GCCGGAGAAG 
    GAGAAGAAAG CCGAGGCGAA GAAGCCGGCC AAGGCCGACG CCGCCAAGAA 
    GGAGGGCGAG GTGCCCGAGA AGGAGAAGGG CTCGCCTGAG CCTAACAAAG 
    AATCGGCCGC CGCCGCCGCC GACGAGGAGG AGGGCGGGGA GGAGTCCGGC 
    GGGAAGAAGG GCAAGAAGAA GAAGAACAAG CAGAAGGACG GCGGCGGCGA 
    GGCGGACGCC GCGGCGCCGG AGAAGCCAGC TGCCAAGGCG CCACCGGCCG 
    CACCCGCGCC GTCGATGCCC GCTCCGGCGC CAACGCTGTC GTCGCCGGAG 
    CGCCCTCACG GCGGGTTCCC GTACTACTCG CCGAAGCCGG TGATGAGCTA 
    CAATGTGGCG CACCCGAGCG CGAGCGTGTC CTCGTACTAC GCGCCCACGC 
    CGGTAATGTC CATGCAGCCG ACGCCCATGC CGCCGCCGCC GCAGATGTCG 
    TACGGCTACT CGCCGTACCC GCCCATGATG ATGCCGCCGC CGCCGCCGCC 
    GGAGTACCTG TACGGCCCGC CGGGCATGCG GTCGTCGCCG CCGCAGGAGT 
    CTTACAGCAA CATGTTCAAC GAGGAGAACC CGAGCTCGTG TAGCGTCATG 
    TAATGCCGCC GCCGGCGACG ATCGCCGGCG CCGGACACGG GACCGATCGA 
    GCTGTAGTTG ACGGGGAGGC TTCTCAATAG AAGCCTCTCC TCTCGTGTGG 
    TTGCTAGCTA GAGTGGAGTA CTGTTAATTA GATGGTCAAA CCTCTTCTTG 
    ACCAGACTTT TTTTTCTCTT CCCATTTTAA AATGCTCTTA GTGCATCATG 
    TAATGAGATG AGTATTTTAG TACCCTTAAT ATCTTCTTTT GTT

    Gene models with high sequence identity

    1. AT5G27690.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
      E-value: 4e-12; Score: 69.70

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heavy metal transport/detoxification protein 2.5e-09
    HMMPanther CHLOROPLAST-TARGETED COPPER CHAPERONE 1.8e-14
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 1.8e-14
    HMMPfam Heavy metal transport/detoxification protein 2.5e-10
    ProfileScan Heavy metal transport/detoxification protein 9.351
    Gene3D no description 6.4e-06

    See the detailed result >

    AT5G27690.1

    Model type
    Protein coding
    Short Description
    Heavy metal transport/detoxification superfamily protein
    Computational Description
    Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR