K35945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35945

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35945

Determination of introduced cDNA(s)

  • J033044C14 - Rice Full-length cDNAs - Original: J033044C14

    full reading [+] show sequence

    Nucleotide sequence: J033044C14 - full reading 
    GTGGCAACTG GTTAGACTTT TTTTTCCCTT TGCCTATAAT AAAGCCATCT 
    CTCATAAAGC CATCGACCTC ATCTCCTCCT CCTCCTCTCT CTGTCTCTCT 
    CTGGCTGTTC TTATCAGTTT ACGTTGTCCT CATCGTCGCC GGCGCCGCCC 
    TCAAAAGCTT CATAGATAGC TCGATCGATC GATCCCGTCG TCGTCGATCG 
    TCGTCGACGC AGCAGCCTCG CCGGCGGCCG GAGACTGGGG AGATCGATCG 
    AGAGGGAGGG AGGTTGAGTA AGGTGGATCC ACGGGTCAGG CATGGCAAGA 
    GGCCCCTACC GGCCGGCGAG GAGGAGGAAG AAGACCAGCC ACCGCCTCCG 
    ACACCACCAG CAAAGCAGGA GCAGCAGGAC GAGGAGGAGC TCGCCGCGGT 
    CGTCATCAGC GGCGGCGGAG CAGGAGCAGC TCCGGCGCCG GAGACGTACG 
    CGCAGTACTA CTACGCGGCG CGCGCCGACC ACGACGCCTC CGCCATGGTC 
    ACCGCGCTAG CCCACGTCAT CCGCGCCGCC CCCGACCTGC ACCTCCCCCA 
    CCACCCATCC TCCTCCGCCT CCGCCGCCGC CCACCCGCAG CAGGCTTCTT 
    CCTTCTACCC GACCGCCGCC GCCGCCGCCT CCTCGCCGTC CGACCAGCTC 
    GCCGCCGCCG CCGCTGCCGA AGAGCAAGGG AGGAGGCGGC ACTACAGAGG 
    TGTTCGACAG CGGCCATGGG GGAAGTGGGC GGCGGAGATA AGGGACCCGA 
    AGAAGGCGGC GAGGGTGTGG CTGGGGACGT TCGACACGGC GGAGGACGCC 
    GCCATCGCCT ACGACGAGGC GGCGCTCCGG TTCAAGGGGA CCAAGGCCAA 
    GCTCAACTTC CCCGAGCGCG TCCAGGGCCG CACCGACCTC GGCTTCCTCG 
    TCACCCGTGG CATCCCCCCC GCCGCCACCC ACGGTGGCGG CTACTACCCC 
    TCGTCGTCGC CGGCGGCGGG GGCATGCCCC CCGCCGCGGC AGCAGCAGAC 
    GGTCGTGCCG TACCCGGACC TCATGCGGTA CGCGCAGCTG CTGCAGGGCG 
    GCGTCGGCGG CAGTTACATG CCGTTCGGCG GCGCCGCGAC GATGTCGTCG 
    TCGACGGTGT CGTCCTCGTC GGCGCCGCAG ATACTCGACT TCTCGACGCA 
    GCAGCTCATC CGGGCCGGCC CGCCGTCACC AATGCCATCG TCGGGCTCCG 
    GCTCGGCGAC CGCGGCGGCG TCGTCCACGA CGTCGGCGTC GTCGCCCGGT 
    GCATGGCCGT ACGGCGGCTC GGAGCGCAAG AAGAAGGATT CGTCGTCGTG 
    ACGTCACTGG ATGGATCGAT CGATGCATGA ATATGCCATG CATTTGAGAG 
    GAAGAGGTCA AGTTTTTTTT TAAGCAATGG AAATGGATTA CATCTTCGGC 
    CTCGGCACGT GGACAGAAAG AGATCAAGTG ATATGGATCG AGAAGAATGT 
    TTAGCTGATC TGCTCTTTAC TCTGCACGAT CGAGGAGATG AAAATGCATG 
    CAATATGCAT GGAGGGGTAA GTGTTAAGTG GTTAATTGGT GATTTTTGCG 
    GGTTAATTAA TTACATGGAC ATTAATTTTT CTTTTGATCA CCTTTTGTTT 
    ATTTTTTCTC TGAAAACTAT CTTCTTTTGT TCATTTTTAT TTTCTTGGAG 
    GTACTTAATT AATTAGCTAG GTTAATTAGC TGGTGATTTT TAGTTTGTTG 
    TTTCCCTCCT TTTGTTCAAG TGTGAACTAA TTGTGCAAAA TTAGTCCAAG 
    TAAAGCAAAG AGAGAGGATT CTTATTTAAT TATTGGTTAA ACATTACCCT 
    TTTTTAAGAT GAAACATGAT GTCTTTTTTT AAAAAAAAAA TCTGAATGAT 
    TACC

    Gene models with high sequence identity

    1. AT5G13330.1 [+] show detail - related to AP2 6l
      E-value: 5e-18; Score: 90.10

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 4e-09
    FPrintScan PRICHEXTENSN 4e-09
    FPrintScan PRICHEXTENSN 4e-09
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.3e-11
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.3e-11
    superfamily DNA-binding, integrase-type 3.4e-24
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.2e-24
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1e-17
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.711
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.8e-38

    See the detailed result >

    AT5G13330.1

    Model type
    Protein coding
    Short Description
    related to AP2 6l
    Curator Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
    Computational Description
    related to AP2 6l (Rap2.6L); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR