K35950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35950

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35950

Determination of introduced cDNA(s)

  • J033114K02 - Rice Full-length cDNAs - Original: J033114K02

    full reading [+] show sequence

    Nucleotide sequence: J033114K02 - full reading 
    AGGCAATCTC TAATTTCAAA TCTCCCCCAT TCGTTGCTTC TCCTCTCCGC 
    TACCCCCGAA CAAATCTAGG GTTTCGGATC GGAATCCTCC ACCGCCGCCG 
    GCGTTACTAC CGGCGATAAT GTCGGCCAGC GGCGAGCCCG AGAAGGTCCC 
    CGCCGCCGCC GAGGGAGAGG AGAAGGCGGA CGGCGCGAAG GATGCCGCGG 
    GCTCCGGGGG AGAGCTGCTG TACTGCGGCG CGACCAACTT CGAGACCATG 
    GGGCGGAAGG TGGTGGGCGG GGCGCAGGGT AACCTAGTGT CGCCGACGCG 
    GATGCGGTCG CTCATGGGCG TCGACATACG ATTCGTTGCC TCCGGGTGCA 
    CGGCTTGCCA TTGTGTTGCC TTGGATGCTG AAGGACGTTG CTATACATGG 
    GGTCGAAATG AGAAGGGGCA GTTGGGGCAT GGGGATACTC TTCAGCGTAA 
    CCTGCCGACT GTTGTTTCTG AACTATCAAA GTACAAAGTC ATTAAAGCAA 
    GTGTTGGAAG AAATCACACA GTGGTTGTAA CCGATGACGG GAAGTCATTC 
    TCATTTGGTC ACAATAAACA CGGACAGTTG GGTACAGGCT CCCTAAGGAA 
    TGAAATTGAG ACATCACCAA TGCCCTGTCT TGTTACTGAA GCAACTAATG 
    CTGTTTGTGG TGCTGATTTT ACTGTCTGGC TGTCATCAGT GGAGGGCTCT 
    ACTATACTTA CAGCAGGTCT TCCCCAGTAC GGTCAGCTTG GTCATGGAAC 
    CGACAATGAG TACAATATTA AAGACTCATC TGTAAAGCTG GCATATGATC 
    CCCAGCCCCG TCCCAGGGCA ATAGCTTCAT TATCTGGGAA AACTATCGTC 
    AAAGCTGCAT GTGGAACAAA TCATACAGTT GCAGTTGATT CAAGTGGCTA 
    TGTTTACACA TGGGGCTTTG GTGGATATGG AAGGTTGGGC CATAGAGAAC 
    AAAAGGATGA GTGGCAGCCT CGCCTTGTTG AAGTCTTCCA GAAGCATAAT 
    GTTCTGCCAC CCAATGCTAT TATATCAGCT GGTGCGGCAA GTTCTGCATG 
    CACTGCCGGT GGAGGACAGT TGTACATGTG GGGAAAGTTA AAGAATACAG 
    GCGACGACTG GATGTATCCA AAGCCATTAT TGGATTTAAG TGGTTGGAAC 
    ATTCGTTGCA TGGCTTCTGG TAACATGCAC CACGTTGTTG GTGCAGATGA 
    TTCTTGCATA AGCTGGGGAA CAGCCCAAAA TGGAGAGCTT GGCTATGGCC 
    CTAATGGGCA AAAGTCATCT GCTAATCCTA AAAAGGTTGA CATCCTTGAA 
    GGAATGCATG TTATAAGTGT TGGTTGTGGA TATGGGTTGT CTGCGATTGT 
    TGTAGACAGA TCAATTGCTA GTGACCGGCT TAATCAGCTG GATATTTATG 
    ACGGTGATAC CTCCACTGAA GTAGAAGACA GAGTGGAGGT CCAGGTTGCC 
    AAGAAGGCAT CTGCTAGCAC CAATGCACGA TCTAACAAGC GCAAGAAAAC 
    CAAGGATGTT TCGAATCAGA AGAGGATGAT GATGAGGAAG ATGATAGCGA 
    CGACGATGAA AATGGTGAAA TAAAAGGTGG TAAGGGTAGA CGTGGCCGCA 
    AACCTTCAAA CAGAGGGAGA GGCAGGGGAG CTAAAAAGGC AACTCCTGAG 
    CCAAAGCCAT CTGCAAGGGG CAGAGGCCGC CCGAAGAAAA CCGAGTCTCC 
    TGCTCAGAAA ACTGGGAGCT TGGGGCGAGG CGGGAAGAGG GGGAAGCGAG 
    GAAGAGCTCG GAAGTGAGTT TAAACCAAGT AGGGCATTGT TGAACTCAGA 
    TCGTGTGATT GTCTAACTCC TGATGCGATC CAACCCAGCC ATTCAAGGGC 
    ATTTGTTTTC TTAGCAATGG TTTCTTACTC TTGCCCGCCT TACATTGTTG 
    AGCCTGTTTT TTGAGTGGAA TTACCTCTGG TATTGAAGAC TTGTCTGATT 
    TGAACCTG

    Gene models with high sequence identity

    1. AT1G19880.1 [+] show detail - Regulator of chromosome condensation (RCC1) family protein
      E-value: 4e-176; Score: 615.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Regulator of chromosome condensation, RCC1 0
    Gene3D Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 1.6e-75
    HMMPfam Regulator of chromosome condensation, RCC1 2.7e-16
    HMMPfam Regulator of chromosome condensation, RCC1 0.00008
    HMMPfam Regulator of chromosome condensation, RCC1 0.000012
    HMMPfam Regulator of chromosome condensation, RCC1 0.0000000053
    HMMPfam Regulator of chromosome condensation, RCC1 0.000015
    superfamily Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 6.3e-75
    FPrintScan A.T hook-like 0.0000055
    FPrintScan A.T hook-like 0.0000055
    FPrintScan A.T hook-like 0.0000055
    FPrintScan Regulator of chromosome condensation, RCC1 0.00000000000082
    FPrintScan Regulator of chromosome condensation, RCC1 0.00000000000082
    FPrintScan Regulator of chromosome condensation, RCC1 0.00000000000082
    FPrintScan Regulator of chromosome condensation, RCC1 0.00000000000082
    FPrintScan Regulator of chromosome condensation, RCC1 0.00000000000082
    HMMPanther UVB-RESISTANCE PROTEIN UVR8-RELATED 1.3e-191
    HMMPanther REGULATOR OF CHROMOSOME CONDENSATION 1.3e-191
    ProfileScan Regulator of chromosome condensation, RCC1 17.238
    ProfileScan Regulator of chromosome condensation, RCC1 10.424
    ProfileScan Regulator of chromosome condensation, RCC1 12.132
    ProfileScan Regulator of chromosome condensation, RCC1 10.705
    ProfileScan Regulator of chromosome condensation, RCC1 11.75

    See the detailed result >

    AT1G19880.1

    Model type
    Protein coding
    Short Description
    Regulator of chromosome condensation (RCC1) family protein
    Computational Description
    Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR