K36016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36016

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36016

Determination of introduced cDNA(s)

  • J023132I18 - Rice Full-length cDNAs - Original: J023132I18

    full reading [+] show sequence

    Nucleotide sequence: J023132I18 - full reading 
    GTTGGGGAAG TCGCGTGGCG GTTAGCTAGT GGAGTTACCA ACCCAACCCG 
    TGTCCCCTTG TCGGATCCGG GCGCGCGACC TCGTCGCCGG CCGGCCGGAT 
    CGCCGCCGCC GCCGCCGTAG AGATGGACCC GGAAGCGGTG CGGAGGAGCC 
    TCGAGCCCAC CGCCTTGTCC AAGGAGGTCG TCGGCCCCGC CTCCGCGAGC 
    CTGCGCTACG ACGCCTTCGC CCTCACCGGC GTCCGCATCG ACGCGGCCGA 
    GCACGGCCGC CTCCTCTGCT CCTTCGTCGT CACCCCGCGC ATCGCCAGCC 
    CGGCGGGGTA CCTCCTCAGC GGCGTCACGG CGACGCTCGC CGACCAGCTC 
    GGGTCGGGCG TGTTCCTCTC CAGCGGGATC GGGACGAGCG GTGTCTCGCT 
    CGAGCTCAAC CTCTCCTACG TCGACGTGGC CAGCATCGGG GAAGAAATAG 
    AGGTTGAGGG AAAGCTGTTG CGCGCTGGAA AATCAGTCGG TGTTGTCTCT 
    GTTGATTTCA GGAAGAAAAA GACAGGCAAA TTGATAGCGC AGGCCCGCCA 
    TACCAAGTAC CTCGCTGTAT CTAGCAAACT ATGAGGTTTT CCTAGATACC 
    AAAATGATCA TGTCAAACTC TTTACTATCT AGACCTTGTC ATACGCTGTC 
    AGTGCTGTAT ATTGTTCTAA AATAGGATCG TGTCCATCTC AAACGCATAG 
    ATTGATGGCG GTTCTGTTAT TTATATTGCT TAGGTCAATT CCTATTGGGA 
    ATGAAGGGAT TTCACAGAAA ATGGGGGTAA ATCCTCCTAA ATTCATACCC 
    AACTCTTCAG TTATACAAAC AGGACCTCAG AAATTACGCA ACTGGAAAAT 
    AAGAGTAGTT AAGTACTCAA ATCAGATTGC ATTTGTGCC

    Gene models with high sequence identity

    1. AT1G04290.1 [+] show detail - Thioesterase superfamily protein
      E-value: 4e-31; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Thioesterase superfamily 8.4e-11
    HMMTigr Phenylacetic acid degradation-related protein 9.2e-12
    superfamily Thioesterase/thiol ester dehydrase-isomerase 2.5e-20
    HMMPanther THIOESTERASE SUPERFAMILY MEMBER-RELATED 2.9e-31
    Gene3D no description 3.4e-12

    See the detailed result >

    AT1G04290.1

    Model type
    Protein coding
    Short Description
    Thioesterase superfamily protein
    Computational Description
    Thioesterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1); Has 964 Blast hits to 962 proteins in 292 species: Archae - 38; Bacteria - 286; Metazoa - 202; Fungi - 157; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR