K36028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36028

Determination of introduced cDNA(s)

  • J033065F07 - Rice Full-length cDNAs - Original: J033065F07

    full reading [+] show sequence

    Nucleotide sequence: J033065F07 - full reading 
    GCTCCCCGCC GCATAAATCC CCTTCGCCTC CCCGCCGCGC CCCGCGGCGT 
    CGCACGATCT CACTGAGGCA TAAAGTGAGA GACCGTGATT GGATCGATCA 
    CCGGAGCGAC GATCAATGGC GACGCTCACC GTGCCCGCCG CCGTGCCGCC 
    CGTCGCCGAG GACTGCGAGC AGCTGCGCAA GGCGTTCAAA GGGTGGGGCA 
    CGAACGAGAA GCTCATCATC TCCATCCTCG CCCACCGCGA CGCGGCGCAG 
    CGCCGGGCGA TCCGCCGCGC CTACGCCGAG GCGTACGGCG AGGAGCTGCT 
    CCGCGCCCTC AACGACGAGA TCCACGGCAA ATTCGAGAGG GCGGTGATCC 
    AGTGGACGCT GGACCCGGCG GAGCGGGACG CGGTGCTGGC GGACGAGGAG 
    GCGAGGAAGT GGCACCCGGG GGGCCGCGCG CTCGTCGAGA TCGCGTGCAC 
    GCGCACTCCA TCGCAGCTCT TCGCTGCGAA GCAGGCGTAC CACGAGCGCT 
    TCAAGAGGTC GCTCGAGGAG GACGTCGCGG CGCACATCAC CGGCGACTAC 
    CGTAAGCTTT TGGTGCCACT TGTGACTGTA TATCGCTATG ATGGGCCAGA 
    GGTGAACACA TCGTTGGCAC ATTCTGAAGC CAAAATACTC CATGAGAAGA 
    TCCATGACAA GGCTTACAGT GACGATGAAA TCATCAGGAT TCTCACCACA 
    AGGAGCAAAG CACAGTTACT AGCAACATTC AATAGTTACA ATGATCAGTT 
    CGGCCATCCA ATCACTAAGG ATCTTAAAGC TGATCCTAAG GACGAGTTCC 
    TTGGTACACT AAGGGCGATC ATAAGATGCT TCACTTGCCC TGACAGATAC 
    TTTGAGAAAG TCATTCGATT GGCTCTAGGA GGAATGGGCA CAGACGAGAA 
    CTCTCTTACA AGGATCATAA CAACTCGTGC CGAGGTAGAC CTGAAGCTGA 
    TAAAGGAGGC CTACCAGAAG AGAAACAGTG TCCCATTGGA GCGAGCTGTT 
    GCTAAAGATA CAACCAGAGA CTACGAGGAT ATACTCCTTG CCCTCCTTGG 
    AGCAGAGTGA GGTGTATATC TGCTCCATCT CGTCTGTCTG ATCCTCCTTG 
    TTTGATCGGA AAATAAGATC TGCATAGAAC TGTGTTCTAT TTTGTTGTTT 
    CTGAATGATA CAAGTGAGCT AGTCTGCATA GCAGTGCTCA TATAATAAAA 
    TCTGTCCTGC ATACTGGTTT GTC

    Gene models with high sequence identity

    1. AT5G10230.1 [+] show detail - annexin 7
      E-value: 7e-96; Score: 347.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Annexin repeat 2e-17
    HMMSmart Annexin repeat 2.4e-13
    HMMSmart Annexin repeat 0.024
    HMMSmart Annexin repeat 1e-19
    HMMPanther Annexin like protein 6.2e-194
    HMMPanther Annexin 6.2e-194
    PatternScan Annexin repeat, conserved site 0
    Gene3D Annexin repeat 5.6e-21
    Gene3D Annexin repeat 1.4e-15
    Gene3D Annexin repeat 1.6e-26
    Gene3D Annexin repeat 2.1e-16
    superfamily Annexin 7e-104
    FPrintScan Annexin, type plant 2.2e-20
    FPrintScan Annexin, type plant 2.2e-20
    FPrintScan Annexin, type plant 2.2e-20
    FPrintScan Annexin 1.1e-19
    FPrintScan Annexin 1.1e-19
    FPrintScan Annexin 1.1e-19
    FPrintScan Annexin 1.1e-19
    HMMPfam Annexin repeat 2.9e-21
    HMMPfam Annexin repeat 5.7e-15
    HMMPfam Annexin repeat 3.4e-16
    HMMPfam Annexin repeat 4.7e-19

    See the detailed result >

    AT5G10230.1

    Model type
    Protein coding
    Short Description
    annexin 7
    Curator Summary
    Encodes a calcium-binding protein annexin (AnnAt7).
    Computational Description
    annexin 7 (ANNAT7); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, response to heat; EXPRESSED IN: root, flower, leaf; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: annexin 6 (TAIR:AT5G10220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR