K36028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36028

Determination of introduced cDNA(s)

  • J033065F07 - Rice Full-length cDNAs - Original: J033065F07

    full reading [+] show sequence

    Nucleotide sequence: J033065F07 - full reading
    GCTCCCCGCC GCATAAATCC CCTTCGCCTC CCCGCCGCGC CCCGCGGCGT 
    CGCACGATCT CACTGAGGCA TAAAGTGAGA GACCGTGATT GGATCGATCA
    CCGGAGCGAC GATCAATGGC GACGCTCACC GTGCCCGCCG CCGTGCCGCC
    CGTCGCCGAG GACTGCGAGC AGCTGCGCAA GGCGTTCAAA GGGTGGGGCA
    CGAACGAGAA GCTCATCATC TCCATCCTCG CCCACCGCGA CGCGGCGCAG
    CGCCGGGCGA TCCGCCGCGC CTACGCCGAG GCGTACGGCG AGGAGCTGCT
    CCGCGCCCTC AACGACGAGA TCCACGGCAA ATTCGAGAGG GCGGTGATCC
    AGTGGACGCT GGACCCGGCG GAGCGGGACG CGGTGCTGGC GGACGAGGAG
    GCGAGGAAGT GGCACCCGGG GGGCCGCGCG CTCGTCGAGA TCGCGTGCAC
    GCGCACTCCA TCGCAGCTCT TCGCTGCGAA GCAGGCGTAC CACGAGCGCT
    TCAAGAGGTC GCTCGAGGAG GACGTCGCGG CGCACATCAC CGGCGACTAC
    CGTAAGCTTT TGGTGCCACT TGTGACTGTA TATCGCTATG ATGGGCCAGA
    GGTGAACACA TCGTTGGCAC ATTCTGAAGC CAAAATACTC CATGAGAAGA
    TCCATGACAA GGCTTACAGT GACGATGAAA TCATCAGGAT TCTCACCACA
    AGGAGCAAAG CACAGTTACT AGCAACATTC AATAGTTACA ATGATCAGTT
    CGGCCATCCA ATCACTAAGG ATCTTAAAGC TGATCCTAAG GACGAGTTCC
    TTGGTACACT AAGGGCGATC ATAAGATGCT TCACTTGCCC TGACAGATAC
    TTTGAGAAAG TCATTCGATT GGCTCTAGGA GGAATGGGCA CAGACGAGAA
    CTCTCTTACA AGGATCATAA CAACTCGTGC CGAGGTAGAC CTGAAGCTGA
    TAAAGGAGGC CTACCAGAAG AGAAACAGTG TCCCATTGGA GCGAGCTGTT
    GCTAAAGATA CAACCAGAGA CTACGAGGAT ATACTCCTTG CCCTCCTTGG
    AGCAGAGTGA GGTGTATATC TGCTCCATCT CGTCTGTCTG ATCCTCCTTG
    TTTGATCGGA AAATAAGATC TGCATAGAAC TGTGTTCTAT TTTGTTGTTT
    CTGAATGATA CAAGTGAGCT AGTCTGCATA GCAGTGCTCA TATAATAAAA
    TCTGTCCTGC ATACTGGTTT GTC

    Gene models with high sequence identity

    1. AT5G10230.1 [+] show detail - annexin 7
      E-value: 7e-96; Score: 347.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Annexin repeat 2e-17
    HMMSmart Annexin repeat 0.00000000000024
    HMMSmart Annexin repeat 0.024
    HMMSmart Annexin repeat 1e-19
    HMMPanther Annexin like protein 6.2e-194
    HMMPanther Annexin 6.2e-194
    PatternScan Annexin repeat, conserved site 0
    Gene3D Annexin repeat 5.6e-21
    Gene3D Annexin repeat 0.0000000000000014
    Gene3D Annexin repeat 1.6e-26
    Gene3D Annexin repeat 2.1e-16
    superfamily Annexin 7e-104
    FPrintScan Annexin, type plant 2.2e-20
    FPrintScan Annexin, type plant 2.2e-20
    FPrintScan Annexin, type plant 2.2e-20
    FPrintScan Annexin 1.1e-19
    FPrintScan Annexin 1.1e-19
    FPrintScan Annexin 1.1e-19
    FPrintScan Annexin 1.1e-19
    HMMPfam Annexin repeat 2.9e-21
    HMMPfam Annexin repeat 0.0000000000000057
    HMMPfam Annexin repeat 3.4e-16
    HMMPfam Annexin repeat 4.7e-19

    See the detailed result >

    AT5G10230.1

    Model type
    Protein coding
    Short Description
    annexin 7
    Curator Summary
    Encodes a calcium-binding protein annexin (AnnAt7).
    Computational Description
    annexin 7 (ANNAT7); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, response to heat; EXPRESSED IN: root, flower, leaf; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: annexin 6 (TAIR:AT5G10220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR