K36030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36030

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36030

Determination of introduced cDNA(s)

  • J033121P22 - Rice Full-length cDNAs - Original: J033121P22

    full reading [+] show sequence

    Nucleotide sequence: J033121P22 - full reading
    GGATCTCTTG GACTCTGCCG GCGCCGGCGT TGGTAGGGTA GCCATGGCGG 
    AGGAGGCCAC CCTGAGCCAC CCGTCGCGGT ACGTGAAGCT GAGCAGGGAG
    CACGACGCCC CCGCCCCCGC CGAGGACATC CGCCCCGGCG AGCTCAACCA
    GCCAGTCCAC GTCCCGCAGC TCGAGGGCAG GAGGTGCAGC GAGTGCGGCC
    AGGTCCTGCC GGAATCCTAC GAGCCCCCCG CCGACGAGCC CTGGACCACC
    GGGATCTTCG CCTGCACCGA CGATCCACAA ACCTGCCGAA CTGGGTTGTT
    CTGTCCTTGT GTTCTTTTTG GACGCAATAT TGAGGCCCTC AGAGAGGATA
    TCCCTTGGAC AACGCCTTGT GTTTGCCATG CTGTCTTTGT TGAAGGAGGG
    ATTGCGCTTG CAATTCTCAC CGCAATATTT CATGGTGTTG ATCCCAGAAC
    GTCTTTCCTG ATTGGAGAAG GTTTGGTGTT CAGCTGGTGG TTGTGTGGTA
    CTTATACGGG CATCTTTCGC CAAGAACTTC AGAGGAAATA CCATCTCAAG
    AATTCTCCAT GTGACCCTTG CATGGTCCAT TGCTGCTTGC ACTGGTGCGC
    GAATTGTCAG GAGCACCGTG AAAGGACGGG GCGGCTTGCA GAGAACAGCG
    CGGTGCCAAT GACCGTTGTG AATCCACCTG CAGTGCAAGA GATGAGCATG
    GCAGAAAGCC GTGGTCCTGT TTCCCCCGGT ATGGAGAACG GAGCACCATC
    AAACTCAAAG GGTGAGCATG AGGAACCCAA GAGTGATCAC GATGATGTGG
    AGGTGATACC TCTATAGGGT GAATGAAAGA AAGATATTCT TTCTGATAAT
    AGGATAGCAA GAGGAATGAA TCGATGTGAC GAATTCATGG ACGCTTGGCG
    ACGATGTTCT TGTGTCATCT GGAACTGGAA TCATCATAAA ACACACAGGG
    TGATACTCTT TCTTTTTTTT TGTACTAGTA TTAAAACTTC AAATATAATT
    AACTGGAGAG CAGGGGCTGC CTGAGTACAT TGCTACGTTT CTGCATCC

    Gene models with high sequence identity

    1. AT2G45010.1 [+] show detail - PLAC8 family protein
      E-value: 1e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Protein of unknown function Cys-rich 1.4e-41
    HMMPfam Protein of unknown function Cys-rich 2.3e-26

    See the detailed result >

    AT2G45010.1

    Model type
    Protein coding
    Short Description
    PLAC8 family protein
    Computational Description
    PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G51400.1); Has 558 Blast hits to 557 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 22; Plants - 524; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR