K36032

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36032

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36032

Determination of introduced cDNA(s)

  • J013120F23 - Rice Full-length cDNAs - Original: J013120F23

    full reading [+] show sequence

    Nucleotide sequence: J013120F23 - full reading 
    GAACGCCGAC TGCTCCTTGG AGAGTCGCAG CCTCCCTTCT CCTCTGCTCG 
    CCCCGCCGCC GCCGCCGTCT CCGCGCCACC GCCGCCCCCG AGATGGCCCC 
    GAAGAAGGAC AAGGCCCCGC CGCCGTCGTC GAAGCCGGCC AAGTCCGGCG 
    GTGGCAAGCA GAAGAAGAAG AAGTGGAGCA AGGGAAAGCA AAAGGAGAAG 
    GTGAACAACT CGGTGCTGTT CGACCAGGCC ACCTACGACA AGCTGCTCTC 
    CGAGGTGCCC AAGTACAAGC AGATCACCCC CTCCGTTCTC TCTGAGAGAC 
    TCAGGATCAA CGGGTCCCTG GCTCGTAGGG CCATCAATGA TTTAATGACA 
    CGGGGCCTAA TCCGCATGGT CTCGGTTCAC TCAAGCCAGC AGATCTACAC 
    CAGGGCAACC AACACCTAAG TGTGAGGGTG ACATGCATCT TTGTTTGCCC 
    TGAATGTGTA CGGGGGGCTT GCCTACTCTA GAACAGCTGT TACCTTTGTC 
    GAGTTTGCTA ATGTTATGTT AAATGAGCTA CTTGTGATGG TCAGCATCTC 
    TATATGGCTG AAACATTTCA GAGATTTTGG TTATTAGTTG AGTACTGTTC 
    TTGTTTGCCC TATATAACTT TTTCCGCCC

    Gene models with high sequence identity

    1. AT2G21580.2 [+] show detail - Ribosomal protein S25 family protein
      E-value: 2e-27; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S25 1.4e-46
    BlastProDom Ribosomal protein S25 9e-33
    HMMPanther SUBFAMILY NOT NAMED 1.6e-65
    HMMPanther Ribosomal protein S25 1.6e-65

    See the detailed result >

    AT2G21580.2

    Model type
    Protein coding
    Short Description
    Ribosomal protein S25 family protein
    Computational Description
    Ribosomal protein S25 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: Ribosomal protein S25 family protein (TAIR:AT4G39200.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR