K36037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36037

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36037

Determination of introduced cDNA(s)

  • J033121P22 - Rice Full-length cDNAs - Original: J033121P22

    full reading [+] show sequence

    Nucleotide sequence: J033121P22 - full reading 
    GGATCTCTTG GACTCTGCCG GCGCCGGCGT TGGTAGGGTA GCCATGGCGG 
    AGGAGGCCAC CCTGAGCCAC CCGTCGCGGT ACGTGAAGCT GAGCAGGGAG 
    CACGACGCCC CCGCCCCCGC CGAGGACATC CGCCCCGGCG AGCTCAACCA 
    GCCAGTCCAC GTCCCGCAGC TCGAGGGCAG GAGGTGCAGC GAGTGCGGCC 
    AGGTCCTGCC GGAATCCTAC GAGCCCCCCG CCGACGAGCC CTGGACCACC 
    GGGATCTTCG CCTGCACCGA CGATCCACAA ACCTGCCGAA CTGGGTTGTT 
    CTGTCCTTGT GTTCTTTTTG GACGCAATAT TGAGGCCCTC AGAGAGGATA 
    TCCCTTGGAC AACGCCTTGT GTTTGCCATG CTGTCTTTGT TGAAGGAGGG 
    ATTGCGCTTG CAATTCTCAC CGCAATATTT CATGGTGTTG ATCCCAGAAC 
    GTCTTTCCTG ATTGGAGAAG GTTTGGTGTT CAGCTGGTGG TTGTGTGGTA 
    CTTATACGGG CATCTTTCGC CAAGAACTTC AGAGGAAATA CCATCTCAAG 
    AATTCTCCAT GTGACCCTTG CATGGTCCAT TGCTGCTTGC ACTGGTGCGC 
    GAATTGTCAG GAGCACCGTG AAAGGACGGG GCGGCTTGCA GAGAACAGCG 
    CGGTGCCAAT GACCGTTGTG AATCCACCTG CAGTGCAAGA GATGAGCATG 
    GCAGAAAGCC GTGGTCCTGT TTCCCCCGGT ATGGAGAACG GAGCACCATC 
    AAACTCAAAG GGTGAGCATG AGGAACCCAA GAGTGATCAC GATGATGTGG 
    AGGTGATACC TCTATAGGGT GAATGAAAGA AAGATATTCT TTCTGATAAT 
    AGGATAGCAA GAGGAATGAA TCGATGTGAC GAATTCATGG ACGCTTGGCG 
    ACGATGTTCT TGTGTCATCT GGAACTGGAA TCATCATAAA ACACACAGGG 
    TGATACTCTT TCTTTTTTTT TGTACTAGTA TTAAAACTTC AAATATAATT 
    AACTGGAGAG CAGGGGCTGC CTGAGTACAT TGCTACGTTT CTGCATCC

    Gene models with high sequence identity

    1. AT2G45010.1 [+] show detail - PLAC8 family protein
      E-value: 1e-92; Score: 336.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Protein of unknown function Cys-rich 1.4e-41
    HMMPfam Protein of unknown function Cys-rich 2.3e-26

    See the detailed result >

    AT2G45010.1

    Model type
    Protein coding
    Short Description
    PLAC8 family protein
    Computational Description
    PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G51400.1); Has 558 Blast hits to 557 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 22; Plants - 524; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR