K36042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36042

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36042

Determination of introduced cDNA(s)

  • J013033E22 - Rice Full-length cDNAs - Original: J013033E22

    full reading [+] show sequence

    Nucleotide sequence: J013033E22 - full reading 
    TCTGAACTTG AGAAAAAAGT TGTTAAATCA AGAAAGCCCT ATCTTCATGA 
    GTCTCGTCAT CAACATGCTA TGCGAAGGGC AAGAGGAACG GGTGGACGCT 
    TCCTGAACAC AAAGAAAAAT GAAGATGGTG CTCCCAGTGA GAAAGCCGAA 
    CCAAACAAAG GAGAGCAGAA CTCCGGGTAT CGCCGGATCC CTCCTGACTT 
    ACAGCTCCTA CAGAAGGAAA CATGAAGTAG CGGCTCGAAA CCTAGAACAG 
    TGGCTTCTGT CCACCGGCAT TCACTCTTGA GGGTGGATTC TTGCTCCAGA 
    ATTGTGCTGC CATCTTTCAA ATGATCTTCA TCGTGCAAAG TAATTATATG 
    TACATTCCTC TGAATGATCT ATGCACCAAT TGTTGATCCT GGCAGGGTAA 
    TAATCTGGAT GTATTGAGTC CATCACAGTG CGAATGTCAC GGGTAGATCT 
    GCTGTTTTCA GGCAATTCAT TCTTGGCTTT CTATCCCACC CGTTGTTGTT 
    GCAAGTTAAG CTAGCAGTAC TTGTCTCAGT GTCCGTGAGA CGTTTGTGTA 
    AGATTAGGTT AAACTAGAAG TTGTAATGCT GTATTAAGTG TTTGTATTTC 
    TAATATGAAC CGTAACAAGG CCAGAGCAGA ACTCGTTATA CAT

    Gene models with high sequence identity

    1. AT3G20910.1 [+] show detail - nuclear factor Y, subunit A9
      E-value: 1e-13; Score: 73.20

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan CCAAT-binding transcription factor, subunit B 23.511
    HMMSmart CCAAT-binding transcription factor, subunit B 1.1e-07
    HMMPanther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED 5.5e-23
    HMMPanther CCAAT-binding transcription factor, subunit B 5.5e-23
    HMMPfam CCAAT-binding transcription factor, subunit B 4.4e-15

    See the detailed result >

    AT3G20910.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit A9
    Computational Description
    "nuclear factor Y, subunit A9" (NF-YA9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A1 (TAIR:AT5G12840.4); Has 696 Blast hits to 696 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 142; Plants - 380; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR