K36044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36044

Determination of introduced cDNA(s)

  • J033027E15 - Rice Full-length cDNAs - Original: J033027E15

    full reading [+] show sequence

    Nucleotide sequence: J033027E15 - full reading 
    GATTTCTTCT TGGTCGCTTT GTTGGCGAGG CCGGATCAGC TCCGGTCCTC 
    CGGCGGCCGC AGGAAAAGGA ATGGCCATGC TTGTCCGCTG TCCAACTTCT 
    ACCCTCCCCG CAGCGAATCA CCGGCAGAAA TCCGGCGTGC TCCTCCGGCG 
    TCCAACGCGC CGCTCCGCTC GCCGTTTCCA ACTGCACGCG GAGAAGCCCG 
    CTTCCCCTGG CGCGGGCAAC GAGACGTCCT CCAGCTCGGA GAACGCCGTC 
    CTCAGGGCCG CCTGGTACGG CTCCGAGCTC CTCGGCATCG CCGCCTCGTT 
    CTTCCGGCCG TCGCAGCCGC CTACGGAGGG GGACAGCGCC GGAGCCGTTG 
    AAGAAGCAGC GTCGGAGCCT CAGGGCCGCG CTCAGGTCGC CGAGGCTGTC 
    AAGGATGACT TCGCGCGGTC ATATTTCGTC ACAGGGAATC TCACGCTGAA 
    GGCTTATGAA GAGGACTGCG AGTTCGCCGA CCCTGCAGGT TCGTTCAATG 
    GCCTGCAGCG CTTCAAGAGA AACTGCACAA ACTTCGGTTC TCTCTTGGAA 
    AAATCTAACA TGAAGCTCAC CAAATGGGAG GATCTGGAGG ACAAATCAAT 
    TGGACACTGG CGTTTCAGCT GCGTCATGTC GTTCCCCTGG AGGCCTATTC 
    TGTCCGCGAC CGGGTACACT GAATATTACT TCGACGCTGG ATCAGGAAAG 
    GCATGTCGAG CACTGGAACG TCCCCAAGAT GGCACTCCTG CGGCAGATTT 
    TCAGGCCGAG TCGATGGGTA TGGGAGAAAC GCACCGACGA ATGAAGCATC 
    GGTGTTCATC GTGAACTAGG ATTATGCATG ATTATACTCA ATGGTACCTG 
    GTTAGGGGCA TTAGTAGTAC TAGTACCTTG CATGGACCGC ATGGTAGCCT 
    ATCAGGTTAA GGCTGCTCGC TCCTGTTGTA CAGACTACAG ACTACAAGCA 
    GTAATAGATC GAACCATAAT CATTTTAGTT CTGGGAGATT AAACCGT

    Gene models with high sequence identity

    1. AT2G46100.1 [+] show detail - Nuclear transport factor 2 (NTF2) family protein
      E-value: 4e-65; Score: 43.90

     

    InterPro Scan Digest

    See the detailed result >

    AT2G46100.1

    Model type
    Protein coding
    Short Description
    Nuclear transport factor 2 (NTF2) family protein
    Computational Description
    Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT3G04890.1); Has 162 Blast hits to 162 proteins in 55 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR