K36045

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36045

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36045

Determination of introduced cDNA(s)

  • J013095L18 - Rice Full-length cDNAs - Original: J013095L18

    full reading [+] show sequence

    Nucleotide sequence: J013095L18 - full reading 
    GTGACTTCCA CCCAGACTTC CAGACTCAAG AGGCGAGGGC TTCCCAATGG 
    GCAACATCGC GAGCAGCGGC GGCGCTAGCC CACGTCCGCC GCCGCCGCAT 
    CTCGAAGCCT ATAGACACGG GGTGCCGCCC CCGTACTACC ACAGCTACCC 
    TCGTCCGCCC CCCGGCGCCG CCGCGCCGCC GCCGGTGCCG GTGCCTGCGC 
    ACGTGGAGCG GCACAGGGCC GTGGCGGTCA ACGTCGGCGT CAACGTCAAG 
    GGGGACACCC TGCGGCTGGT GCCCGACGAC GACGACGACG ATGGCCGCAG 
    CCTACTCCTC GCCTTCTCCT TCGACGCCGA TGGCCCCGGA AGCATAACTG 
    TCTGCTTCTT TGCACAAGAA GATAAGTGTG CCTTGAAGAC CGCAAAGGAA 
    AATTTGCTTC AACCTGTGAC CGTGCCTTTT AAGGAAGGTC GAGGTCAGGA 
    GTTCAAGCAA CCAAGTGGGT CGGGAATCGA TGTCTCTCGT TTTGAGGAAT 
    CTGAGCTAAC TAATGTTGGG GAAGGTGGTG TATTCCCTGT AGCATTCAAA 
    GTACAAATGG ATGTGTCAGG CAACCAAGAA TCAGAAGGGG CACATGAGAC 
    CGAACAATCG AAATATCTTG TTAAATATGC TATATTTGTG AAGAAAGACA 
    ATGCTGAATA TGGAGTTCAT GTTGTGCAGC AGATCCTTTG GGTAAATGGA 
    ATCAGATATG TCTTGCAGGA AATATATGGT ATTGGGAACA CAGCTGATAA 
    GAATGCTCAT GAGGATGATT CCGGGAAAGA ATGTGTGGTT TGCCTTTCTG 
    AACCAAGAGA TACTGCTGTT CTTCCATGCA GGCATATGTG CCTGTGCAGG 
    GAGTGTGCTC AAGTTTTAAA ATATCAGACC AACAAATGCC CAATATGCAG 
    GCAACCTGTT GAGGGCCTTC GCGAGATAGA GGTTGATAAC AAACCGATTC 
    CCCAACAAGG ATCTCAGCAG TTAACAGCAC CTCAATAAAG TCTCATCTGA 
    TTGCAAGCAA ACTACCTGTA CATGTGTCAT GTGTATATAA AAGGTCTGTG 
    CTTTCGGGAA GGGGAAATCG GAAGTTACCT GGTAGCAACA AAGCTGTTTC 
    TGATATTTTG TTAAAGAATG AACCTACTGG GATTTAATTG TCTACGTTTG 
    GACCACCAAA CTCGACTTAT TACTTGGAAA AGACACTATT TTAGATTGTA 
    TGGTTCAAGC CTTTTGCAGG GGACAATCGT TTTCTTGTTC TAATTTAGTT 
    ACTCATCCAT CACTTTGATG TGTTTAAGAG CATACGATGT GTTCTTTCTA 
    GTGG

    Gene models with high sequence identity

    1. AT3G09770.1 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0000011
    superfamily RING/U-box 0.000000000000032
    ProfileScan Zinc finger, RING-type 11.501
    HMMSmart Zinc finger, RING-type 0.00056
    HMMPanther MAHOGUNIN 3.2e-86

    See the detailed result >

    AT3G09770.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03200.1); Has 9681 Blast hits to 6810 proteins in 512 species: Archae - 8; Bacteria - 442; Metazoa - 3215; Fungi - 970; Plants - 3369; Viruses - 475; Other Eukaryotes - 1202 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR