K36118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36118

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36118

Determination of introduced cDNA(s)

  • J023052E08 - Rice Full-length cDNAs - Original: J023052E08

    full reading [+] show sequence

    Nucleotide sequence: J023052E08 - full reading
    GAACTGCTGC GTCCACTATG ACGTGTTCTG TTCGGAGGCC TCGATTCCAA 
    TTCGAAGGTT TCGGAATCTG AAATGGCGGC GGCGGCGGTG CGGGCGGCGG
    AGGAGCTTGC GGAGAGGGAG ATGGCGGGGC GCGACGCCTC CCACGACGCC
    GCCCACGCCC TCCGCGTCCG CGACCTCGCG CTCTCCCTCG CCGCCGAGCT
    CGGCCTCTCC TCCTCCCCCG ACCGCCTCCT CATCGTGGAG ATAGCCGCGC
    TCCTGCATGA CATCGGTGAT TACAAGTACA CCAAGGACAA TGCTGAGGAT
    ATGAGCATCG TGGAGAGGTT TCTTGAAGAG GTGGAACTGG AGCAGGGCCA
    GAGGGAGGAA ATTGTGGCGA TCATTAAGGG GATGGGATTC AAAAATGAAG
    TTTCAAAGAA GTCTGTTGTT GAGCCTACTC TTGAGTTTGC AATTGTACAA
    GATGCAGATC GTCTTGATGC AATTGGTGCA ATTGGTATTG CAAGATGTTT
    TACGTATGGT GGGAGCAAGA AAAACACATT GCATGATCCT AAGATACTGC
    CGCGTGATAA TTTGTCAAAG GAGAAATACA TGTCCAAGGA TGAAAAACAG
    ACATCAATTA ATCATTTCCA TGAGAAGCTA TTTAAGTTGA AGGACATGAT
    GAAGACAGAG GCCGGGAAAA AGAGAGCAGA GAAAAGGCAC AAGTTCATGG
    AGGACTTTGT GGCTGAATTC TATGAAGAGT GGAGTGGCAG AGCTTGAAGT
    TGACCAACCA GGTTATGGGC TGTTGGTCTG TGGCATAGCT TGAAGTTGGC
    CAACCAACAA CAACTCATAT TGCTAGTCGT CTACTTGGTG ACATTAGCAT
    GTTTTGTTGC TGATATGTTA AGCCATGCAA AAAAACGAGG GATAAAGCAC
    ACTTGAGTGG CCAAACCACT GAATAATGCT CCTCAACAGG TACTTTGCCT
    GAACTCTGAT TTTTTTCTGG AGCACCTGTG ATTGATGTAC ATTTGATCGG
    CAGCAAAACC

    Gene models with high sequence identity

    1. AT1G17330.1 [+] show detail - Metal-dependent phosphohydrolase
      E-value: 6e-61; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Metal-dependent phosphohydrolase, HD subdomain 1.1e-09
    HMMSmart Metal-dependent phosphohydrolase, HD domain 3.3e-11

    See the detailed result >

    AT1G17330.1

    Model type
    Protein coding
    Short Description
    Metal-dependent phosphohydrolase
    Computational Description
    Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); Has 1677 Blast hits to 1677 proteins in 841 species: Archae - 70; Bacteria - 1404; Metazoa - 0; Fungi - 90; Plants - 42; Viruses - 5; Other Eukaryotes - 66 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR