K36121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36121

Determination of introduced cDNA(s)

  • J023128L13 - Rice Full-length cDNAs - Original: J023128L13

    full reading [+] show sequence

    Nucleotide sequence: J023128L13 - full reading
    GACGGCCAAT CTCTGCCCCT TGCTACCTCC CGCGGCGCCG CCGCCGCCGA 
    TCAGCACCAG CCGAAGTCCA GGCAGGCGGC TCGCAGGAGC AGCTCAGCAG
    CGGCGAGGAC CAAGTCGTCA AGTCGACGCG GAGGCAATGC ACTAATGCAG
    AGGCCAAATC GAAGGAGGCG GCGGGGTAGG TCCTGCCGTG GAGGTCGAAT
    CCCCGGAGGG GAACGAGCCG GCGAGGTGGG ATTCGGCCGG CCGCATACAC
    GCGCCTCCAA GTCCACTTTA CAGGAAAAAG ACTTGATGGC ACTTGGTTTG
    CATCCACCAG AGAAGATGGT GTGCCTCTGA CTTTTATATT AGGACAAGAG
    AATGTGATGC GAGGCTTCAG TATGGCTGTT AGCTCAATGC AAGCAGGGGA
    GAAAGCTGTG TTCACCATCC CTCCAGAATT AGCAGGCACC AAGTCTCGGT
    GTCCAGTTGA TATCCCAGGG AATATTGCCC CCAATGAAGC ACTGCGGTTT
    GATATTGAGC TCATCTCTCT TGTCACCATA ACTGACATCC TCGATGATGA
    AGGCATACTG AAAAAGATCA TCAAGCGTGG ACTGGGGAGC GATAAGCCTT
    GTGATTTGGA TGAAGCACTT GTGAACTACA ATGCTTGCCT GGAGGATGGG
    ATGTCAGTGT CCATGTCTGA AGGTATTGAG TTCAACCTTG CGGAAGGCTT
    CTTTTGTCCT GCATTTGCAC GTGCTGTGGA GACTATGACA GAAGGAGAGG
    AAGCTGTTCT CATTGTTAAA CCTGAATATG GTTTTGGTGA ACGGGGTAGA
    CCATCCATAG GGGATGAAGC CGGTGTGCCA CCTGATGCAA CTCTCTATGT
    GTACCTTCAA TTGATGTCAT GGAAAACAGT GAGGCACATT GGAGAGAATG
    GGACAATCCT CAAGAAAACC CTTTGTAGAG GAAATTTGGA AGGACAGCAG
    ACAGAGAATG AAGCAGTGGT CGGAGTTCGA CTGATTGGTA AACTGCAAGA
    TGGGGCTGTA TTTGATCAGA GGGGCCACGA AGGAGATGAG CCGTTCAAGT
    TCATGGTTGA CGAAGAGCAG GTTAGCGAAG GCCTAGAGGA AGCTGTTCTT
    ACAATGCGGG AGGGAGAGGT CTCCTTGTTC ACCATTCCCC CCCATCGTGT
    GCAGGATCAA CTTTTGGTTG TCCCTGTTGG CTCTTCCGTG ACCTACGAAA
    TCGAGCTTGT CTCAGTTGTA AATGACAAGC CTCCCCGGCT CATGAGTCAA
    GCAGAGACCA TCGAAGCTGC AGCTGAAAAG GAAAAGGAGG GAGACAAACT
    GTTCAGCTCA AGCAAATTTT TGAGAGCTTA CAGGAGATAT TACAAGGCCA
    GGCAGATCAT ACTCCTGCGC TTTGGACGAG GAGAAACAGA TGAAGAAATT
    AAACAAATGT TGATTTCCCT TACCTTCAAA GCTGCTGAGT GCGCGAATCA
    GCTTCAACGC TATGAACAAG CATACCACCG CTATCGTGAG ATATTGGAGT
    ATGACCCTGG AAATGTGAAA GCACGGGAAA TGACAGGGCG GGCATTCCCT
    GAAGCATCTC TTGGAATAGA CACTGCCGCA ATGCATAGGG GCTTGGATCA
    GCCATTTAGG CCGAAAGAAG AGTTTCGCGT GTGCGGCGGC TACATGACCC
    CGGAGTTCTC TGAGATGAGA CTGAAGCAAG GGCATAAATA CCATGGAAGT
    ATAAATATTT TTGTCCCTCC TATCCCAAGA CCAGAGACCA ATGCAAATCA
    AGCTGTTCCA GCTGCTCCTA CAGGCCACAG GCTCACACAC AGCCCTACTA
    CACCTCCAGG TCCAAATAAT GAGAAAAGAA ACAGAAGCAG TCGTGTTCCA
    GTCGCTGCCA GGAAGGGGCT AGCTTCTTGC TTCAGATGCA TCTCTTCAGA
    TTGTAACTGA AGACATGTTC CCTGAAAGCA ATAAAGAAAA AAAATCTTGA
    CCAGCAACAG GGCTGTACTA ACACTAGTTT ATTTTTTTTC GAACTAATAA
    TTTAACTTAG GTCGAAATTA ATGACGATTC TATGG

    Gene models with high sequence identity

    1. AT5G48570.1 [+] show detail - FKBP-type peptidyl-prolyl cis-trans isomerase family protein
      E-value: 2e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 3.9e-19
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 0.0000000001
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 0.0000000000022
    HMMPanther PEPTIDYLPROLYL ISOMERASE (ROF1) 8.8e-98
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 8.8e-98
    Gene3D no description 5.1e-20
    Gene3D no description 1.3e-25
    Gene3D no description 3.7e-17
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 19.561
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 16.845
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 16.066
    Coil coiled-coil 0
    superfamily FKBP-like 2.9e-23
    superfamily FKBP-like 1.2e-21
    superfamily FKBP-like 1.8e-19

    See the detailed result >

    AT5G48570.1

    Model type
    Protein coding
    Short Description
    FKBP-type peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR