K36139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36139

Determination of introduced cDNA(s)

  • J023060F18 - Rice Full-length cDNAs - Original: J023060F18

    full reading [+] show sequence

    Nucleotide sequence: J023060F18 - full reading 
    GACGCGCCGC GCGACACAAT CAGTTCACCA CCGCAGCCAC CCCTAGCTAA 
    ATCCCTCGGC GGCGGGGGAG GTGGCGGCGT GCGTGGGCAT CTCGGCGGGG 
    GTCGTACGCT CATGTCGGCG CTGGTTTGGC TCTGCGTATT GGTTTTAAGT 
    GGATTTCCTG TGCACAATGT CATCGATTCT TCGATCCATT CAGCTGAGGA 
    ACAGTATATG GAGTAGCTTC CCTGTCAGAT TTCTTAAGCA ACAAGCCGGA 
    TTATCAACTG TAGAATTGCT TGATCCTAGA AGCTGTGGGA AACGACATTT 
    CACAACACAA GTACAGGAAC ATGGGAAGGA AGTTGCGGCG GCAGCAACTA 
    TTCTAGTTTT TGATCTTGAG ACTACTGGCT ATTTCCATAA GGATCATAGA 
    ATAGTTGAGT TTGCACTCTG TGATCTTTCT GGAGGAAAGA ATAGCACTTT 
    TGAAACTCTT GTTAATCCTG AAAGGACTGT TCCTGACTAC GTTGAACATC 
    TCATTAAAAT TGGCACTGAT CTCGTGTGCA GGCCTGGTAT CCCAAGGTTT 
    AGTGATGTAA TCCCACTACT ATTGGCATTC GTTCGAAGTC GCCAAGCTCC 
    TGGCAAGCCA GTTCTGTGGG TTGCTCATAA CGCAAAACAA TTTGATGCTC 
    GTTTCCTTGC TCAGGAGTTT GATCGTTGTT CAGCACCACT TCCTGCAGAT 
    TGGCTGTTTT TTGACACCCT TCTCTTGGCA AAAAAGATGG TGAAAGCAGA 
    GGGAAAAAAA CGTCGTACAA GCTTGGAGGC ACTGAGAGAA CACTATGGCA 
    TCGTCTCGCA TGACGATGCG CATAGAGCAA TGCGAGATGT TATGATATTG 
    TCTCAGGTTT TCCAGAAAAT GACTTTTGAT CTAAAACTGA CAAATGAAGA 
    ACTAATAAAC GAGGCCATGA AGGCAAGTGA ATTCAGCAAG ATTTCTTAAT 
    TTTTAAAACT CCAGCTTTTT TTAGTGCTTA AACTTATTTA ACCTTCTGTG 
    CACATGCTGG ATATTTTTCT AGCTGGTGTC ATCTCGGCAT TAAAGAACTA 
    TGCCTTTTTT ACTATTGAAA TAGTACCTGT ATTTTTCAAT AAAAACCTGC 
    AATTTGGACC GAACAAGTTG ATATCTTCAT TGCTACCAGG ATGATAAAAC 
    CATGGCTGAA CCATTTGCAT TGGATGACCA TCACATCTAT TTGATATGCT 
    TCGGTGCTGG ATTCAGTGTG GAATGATATT TCTTTGATTT GTCTTGCTTT 
    ATCTATGAGC TGTCAGCTAT TGAAAAGTAT TATTAGTGCT TTTTATTCTT 
    GGGTAGCATA TGCCATTTAA ATTATTTGAA CTTGTGAGAT CAATACATCC 
    TGGTGGAAGT TAGTTGGGAC CTGTT

    Gene models with high sequence identity

    1. AT5G26940.4 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 4e-47; Score: 186.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Exonuclease, RNase T/DNA polymerase III 1.8e-21
    Gene3D no description 7.4e-27
    superfamily Polynucleotidyl transferase, ribonuclease H fold 2.8e-31
    HMMSmart Exonuclease 2.9e-37

    See the detailed result >

    AT5G26940.4

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023036J23 - Rice Full-length cDNAs - Original: J023036J23

    full reading [+] show sequence

    Nucleotide sequence: J023036J23 - full reading 
    GATTCACAAC CCATACACAC TCTGTGCGCG TGTGTGTCTC TATGATGTCG 
    GCGTCGCCGG AGTTCTACAA GCCGGCGCCG GTGTTCTCGC CGTGCAGCTC 
    GCCGCTGCGG CTGCTGCAGC AGCAGCACGG GGAGGATCAT CAGGAGGAGT 
    ACGGCTACGG CAGCAGCGGC GGCTGCTGCA GGACGCCGAC GGGAGGGGAG 
    AGCAACCTGA AGGCGCCAGG GACGTGCCCG CCGGCGCCGA GGAAGCCGCG 
    CGCGCCCGCC GCGCCGTGCC GGAAGCGGCT GTTCGAGGTC GAGGTGTTAA 
    GCCTCCGCCT CGAGGAGCTC GAGCGCCTCT TCTGGCGCCC TCCGCCGCCG 
    CCGCCGACGA CGCAGCCGCA GCCGCAGCCG CAGCAGCCGC CGCAGAAGCG 
    CCGGAGGGTG GCCAAGCTCG GCAGCTAGCT AGCTCGCCGG AGTAGCACAC 
    GTGTGCGTGG ATGGCCATAA GTGGTGTTGG TTGGGTTAGT TACTAGAGCT 
    AAAGCTAGAG TAGTTCGGAG TTGGTAGGAT TTAGGCGTAC TGGCGTTTTT 
    ACTGCTGTAC TTGCACTATA TTTCTACTGC TCAAATTATC TCCATGGCTA 
    GTATAGCTGG TTGTACACTT TGTACTATAC CTGCCTAGCT AAGGTTGCTA 
    CTACTACTAC TGTAGCGTAT CAGTGCAGTT TATACTAGTA TCTGTGTATG 
    TGATGGCATT GGGGGTGTGT ACTCCTGGTA CGTATTAGCA ATCAATAGGA 
    GCTTAGCTTG AATTTGCTTC CATGCATATA TGGCAGTTGC AGTGCAGCCT 
    GTGAAGTAAT GACAAGTTGT ATGATCCGTG TATACATCCA TCAATGTATC 
    AGTGAATCAA TCCTTGC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >