K36145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36145

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36145

Determination of introduced cDNA(s)

  • J023002E24 - Rice Full-length cDNAs - Original: J023002E24

    full reading [+] show sequence

    Nucleotide sequence: J023002E24 - full reading
    GGGAGTCCGC GATGGCTGCT TGCCTCACCG AGTGAACGCA CGCGCTCGCC 
    GGCGGCGACC AAGAAACCAC GCGAAGACAT GGCATTCCCG AGCGGCAAAG
    CCTACTACCT CCACCTCCTC CTGCTCGCGA TCCTGCCAAG CCTCGTCGCG
    CGGCGCGGCG CGGCGCAGCA GGGCGGCGTC GACGAGAAGC AGCTCCTGCT
    CCAGGTCAAG CGCGCGTGGG GGGACCCCGC GGCGCTCGCG TCGTGGACGG
    ACGCGGCGCC GCACTGCCGC TGGGTGTACG TGTCCTGCGA CGGCGGCGGC
    ACCGGCCGCG TCACGTCGCT GTCCCTCCCC AACGTCGCGG TCGCCGGCGC
    CGTCCCCGAC GCCATCGGCG GGCTGACGGC GCTCACGGTG CTCAACCTCC
    AGAACACCAG CGTCGGCGGC GTGTTCCCGG CGTTCCTCTA CAACCTCACC
    GCGATCACCT CCATCGACCT CTCGATGAAC AGTATCGGCG GCGAGCTCCC
    CGCCGACATT GACCGGCTCG GCAAGAACCT GACCTACCTC GCCTTGAACA
    ACAACAACTT CACCGGCGTG ATACCGGCGG CGGTGTCGAA GCTCAAGAAC
    CTGAAGGTGT TTACCCTCAA CTGCAACCAG CTCACCGGCA CGATCCCGGC
    GGCGCTCGGC GAGCTCACTA GCCTCGAGAC GCTCAAGCTC GAGGTGAATC
    AGTTCACCCC CGGCGAGCTG CCGGGATCGT TCAAGAACTT GACGAGCCTG
    AAGACGGTCT GGCTGGCGCA GTGCAACCTC ACCGGCGATT TCCCCAGCTA
    CGTCACAGAG ATGATGGAGA TGGAGTATCT CGACCTGTCC CAGAATTCAT
    TCACCGGAAG CATACCTCCT GGGATTTGGA ACATTCCAAA GCTGCAGTAC
    TTGTTCCTGT ACACCAACCA GCTCACCGGC GACGTCGTCG TCAATGGCAA
    GATTGGAGCA GCGAGCTTAA TTTATCTCGA CATATCTGAG AACCAGCTGA
    CTGGAACGAT CCCAGAGAGC TTTGGAAGTT TGATGAACCT AACTAACTTA
    GCCTTGATGA CGAACAACTT CTCCGGCGAG ATACCGGCGA GCCTTGCTCA
    GCTTCCATCG CTGGTGATAA TGAAGCTGTT CGAGAACAAT CTCACCGGTC
    AGATTCCGGC GGAGCTCGGG AAGCACTCGC CATTTCTGAG AGACATCGAG
    GTCGACAACA ACGACCTCAC CGGGCCAATA CCGGAGGGGG TCTGCGACAA
    CCGCCGGTTG TGGATCATCT CCGCCGCCGG CAACCGGTTG AACGGCTCAA
    TTCCGGCGAG TCTTGCCACT TGCCCGGCGC TGCTGAGTCT CCAGCTCCAG
    GACAACGAGC TTTCCGGCGA GGTGCCGGCG GCGCTGTGGA CGGAGACGAG
    GCTGATCACC GTGCTCCTGC AGAACAATGG ACACCTCACC GGAAGCCTGC
    CGGAGAAGCT GTATTGGAAT CTGACGAGGC TTTACATCCA CAACAACCGT
    TTCAGTGGCC GGCTTCCGGC GACGGCCACC AAGCTCCAGA AGTTCAACGC
    CGAGAACAAC TTGTTCTCCG GCGAGATACC TGACGGGTTC GCCGCCGGGA
    TGCCATTGCT GCAGGAGCTG GACCTGTCAA GGAATCAGCT CTCCGGGGCC
    ATCCCGGTGA GCATCGCGTC GCTCAGTGGC TTGTCGCAGA TGAACTTCAG
    CAGGAACCAG TTCACCGGCG ATATTCCGGC GGGATTGGGC TCCATGCCGG
    TGCTCACCCT GCTCGACCTT TCGTCGAACA AGCTCTCCGG CGGTATTCCG
    ACGTCGCTGG GATCGCTGAA GATTAACCAG CTTAACCTGT CGTCAAATCA
    GCTCACCGGC GAGATCCCGG CCGCGCTCGC CATCTCCGCC TACGACCAGA
    GCTTCCTCGG CAACCCCGGT CTCCTCGCCG CCGGCGCGGC CCTCGTCGTC
    TTGATCGGGG CGCTCGCCTT CTTCGTCGTC CGCGACATCA AGAGGCGGAA
    GCGGCTCGCG CGGACAGAGC CGGCATGGAA GATGACCCCA TTCCAGCCCC
    TCGACTTCAG CGAGGCCTCC CTTGTGCGCG GGCTCGCCGA CGAGAACCTC
    ATCGGCAAGG GCGGCGCGGG GCGCGTGTAC CGCGTCGCGT ACGCCAGCCG
    GAGCAGCGGC GGCGCCGGCG GCACCGTCGC CGTGAAGCGC ATATGGACCG
    GCGGCAAGCT GGACAAGAAC CTGGAGCGCG AGTTCGATTC GGAGGTGGAC
    ATCCTCGGCC ATGTCCGCCA CACCAACATC GTGAAGCTCC TCTGCTGCCT
    CTCCCGCGCG GAGACGAAGC TCCTCGTGTA CGAGTACATG GAGAACGGCA
    GCCTCGACAA GTGGCTCCAC GGGAACAAAT TGCTGGCCGG TGGCGCGACG
    GCGAGGGCGC CGTCGGTCCG GCGAGCGCCG CTGGACTGGC TGGCGAGGGT
    CAGGGTGGCC GTCGGCGCGG CGAGGGGCCT CTGCTACATG CACCACGAGT
    GCTCGCCGCC GATCGTGCAC CGGGACATCA AGTCCAGCAA CATCCTGCTC
    GACGCTGAGC TCATGGCCAA GGTCGCCGAC TTCGGGCTCG CCCGGATGCT
    GGTCCAGGCC GGGACGCCGG ACACCATGAC CGCCGTCGCC GGATCGTTCG
    GCTACATGGC TCCCGAGTGC GCGTACACGA GGAAGGTGAA CGAGAAGGTC
    GACGTGTACA GCTTCGGGGT GGTGCTCCTC GAGCTGATCA CCGGCAGGGA
    AGCCCACGAC GGCGGCGAGC ACGGCTCGCT GGCGGAGTGG GCGTGGCGGC
    ACCTGCAATC GGGCAGGAGC ATCGCCGACG CGGTGGACAG GTGCATCACC
    GACTCCGGGT ACGGCGACGA CGCCGAGGTC GTGTTCAAGC TCGGCATCAT
    CTGCACCGGC GCGCAGCCGG CGACGAGGCC GACAATGAGG GACGTTCTGC
    AGATTCTGGT GAGGTGCGAG CAGGCGCTCC AGAACACCGT GGACGGGAAG
    GTGGCGGAGT ACGACGGCGA CGGCGCGCCG TTTCTGCCGA TCAGGGGTGG
    CAGCCGCCGG AAGCAGCTTT CGGACACCAA AGGCATCGAC GACGGCAACG
    GCAGCTTGGA CAGCATAGTA TGAGAACAAT GGTCAATAAG AAGTATAACC
    TGATCCAATG GTTACCATCT AGGAGAGATG GCACGCTAGT TAGGAGAGCA
    GGTAGATACC AGACAAATAC ATTCGCCATC CTTCAGTTAT TTGCATGTAA
    TGAGTATTGT AACTTTGTAA ATGCATCTAT AAAATTTTGG GAC

    Gene models with high sequence identity

    1. AT5G25930.1 [+] show detail - Protein kinase family protein with leucine-rich repeat domain
      E-value: 0; Score: 724.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 36.442
    Gene3D no description 4.8e-59
    Gene3D no description 5.6e-37
    Gene3D no description 4.9e-25
    Gene3D no description 0.000000000000017
    Gene3D no description 9.3e-48
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther LRR RECEPTOR-LIKE KINASE 1.6e-200
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.6e-200
    FPrintScan Toll-like receptor, leucine rich repeat-containing 0.000056
    FPrintScan Toll-like receptor, leucine rich repeat-containing 0.000056
    HMMPfam Serine/threonine-protein kinase-like domain 1.7e-42
    HMMPfam Leucine-rich repeat 0.3
    HMMPfam Leucine-rich repeat 0.014
    HMMPfam Leucine-rich repeat 0.047
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.00000038
    superfamily Protein kinase-like domain 5.4e-72
    superfamily RNI-like 1.2e-67
    superfamily RNI-like 2e-41
    HMMSmart Serine/threonine-protein kinase domain 3.2e-27
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.0000000000000034

    See the detailed result >

    AT5G25930.1

    Model type
    Protein coding
    Short Description
    Protein kinase family protein with leucine-rich repeat domain
    Computational Description
    Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor like protein 52 (TAIR:AT5G25910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR