K36148

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36148

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36148

Determination of introduced cDNA(s)

  • J023061H06 - Rice Full-length cDNAs - Original: J023061H06

    full reading [+] show sequence

    Nucleotide sequence: J023061H06 - full reading 
    GACTCCTCGT CCCCTCCTCC ACTTCCACTT CCACACTGCT CTCCCCCTCC 
    CCTTCCTCCC GCTCCGGCGA AGGCGAGCGC GCGGATCGGC GTGATGGCGG 
    CGGCGGCGCC CTCTCCCCCA CCCGTCGCGG CGCTGGAGCA GATGAGCAGG 
    ACCAAAATGT TCGGCGGCCA CAACCTCCGC TTCCGCCACC ACAGCGCCAC 
    GCTCGGCTGC CCCATGACCT TCTCCGTCTT CCTCCCGCCG TCGCCGGCAT 
    CCGACCTCCC CGTGCTGTAC TGGCTCTCCG GCCTCACGTG CAACGACGAG 
    AACTTCGTCA CCAAGGCCGG CGCGCAGCGC GCCGCCGCCG CCCACGGCAT 
    CGCCCTCGTC GCCCCCGACA CCTCCCCACG TGGGCTTAAT ATAGAGGGAG 
    AGGCAGACAG TTGGGATTTT GGTGTTGGTG CTGGATTCTA TTTGAATGCA 
    ACAAATGAAA AGTGGAAAAA TTGGCGCATG TATGACTATG TTGTGAAGGA 
    GCTTCCAAAA GTTTTAAGTG ACAACTTTGA ACAGCTGAAC ACTTCACGGG 
    CATCTATTTT TGGGCACTCA ATGGGAGGGC ACGGTGCACT AACAATCTAC 
    TTAAAGAACA CTGATAAATA CAAGTCGGTG TCTGCATTCT CTCCGGTTGT 
    CAATCCAATC AACTGCCCTT GGGGTCAGAA AGCATTCTCA AACTATTTGG 
    GCCCAGCTAA ATCAGATTGG AAGGAATATG ATGCAACCTG CCTGATCAAG 
    AAGTGCAACA AAATTTCAAC TCCTATTCTG ATTGACCAGG GAGAGGATGA 
    CAAATTTCTG GCAAAGCAGC TTCTACCTCG CAACTTTGAG GAGGCGTGCA 
    AGGCTGTGGG AGCTCCTTTG ACTCTCCGCA TGCAACCTGG ATACGACCAC 
    TCCTACTTTT TTATTGCTAC ATTCATTGAT GATCACATTG CTCACCACTC 
    TCAATTTCTG AAGAGTGCCT GACTACCAAG CCACATGTAA TTGAAGCAAT 
    GGAGAGACAG GGGAGGCTTT CAATCTTTCT ACTTACTATG CCCTAGCATT 
    ATTTCTCAGC CCGGACAATG TCAGGTGCCT TTGATAGCCT GAGTCGAACA 
    GTATCTCCAG CTGGATATAA GATGAATGAT TTGGTTTTGC AGGCTATTCA 
    AGTACAGTAT AATTGGATCC

    Gene models with high sequence identity

    1. AT2G41530.1 [+] show detail - S-formylglutathione hydrolase
      E-value: 5e-117; Score: 417.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Putative esterase 3.4e-57
    HMMPanther S-formylglutathione hydrolase 1.1e-169
    Gene3D no description 1.5e-56
    HMMTigr S-formylglutathione hydrolase 9.1e-155
    superfamily alpha/beta-Hydrolases 2.2e-77

    See the detailed result >

    AT2G41530.1

    Model type
    Protein coding
    Short Description
    S-formylglutathione hydrolase
    Curator Summary
    Encodes a protein with S-formylglutathione hydrolase activity.
    Computational Description
    S-formylglutathione hydrolase (SFGH); FUNCTIONS IN: hydrolase activity, acting on ester bonds, S-formylglutathione hydrolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative esterase (InterPro:IPR000801), S-formylglutathione hydrolase (InterPro:IPR014186); Has 3295 Blast hits to 3294 proteins in 1269 species: Archae - 2; Bacteria - 2478; Metazoa - 258; Fungi - 146; Plants - 60; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR