K36149

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36149

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36149

Determination of introduced cDNA(s)

  • J023010P10 - Rice Full-length cDNAs - Original: J023010P10

    full reading [+] show sequence

    Nucleotide sequence: J023010P10 - full reading 
    GATACGAACA ACAAGAGACT ACTCCATTAC TATATTAGAT TGATTGATTA 
    GGGGAGGGGA TTGCTGATTA ATTTCATCTC TCTAACCCTA GCAGCAGATC 
    CCTCTCTCCC CTAGCAACTA GCAAGCAGAG AGAAGCAGCC GCCTCCATGG 
    ATCCTAATCA GATGATGGGC CGAAGCTTCC CCATGTGGGC CGCCGCCGAC 
    GACCCTTCCG CCCAGCCACC GCCGTTCCTC CCTCCGCCCA ACCGCGGCTG 
    GAAGCGTAAG AACCCTAGCA CCGCCGCCGG TGGCTACCAG CCCCCCGCCC 
    TCGGCGACCT CCAGGTGCAG AACCGCGCCA AGGCTCGCCG CTGGTTCAAG 
    AACCAAAGCG GAGGCGGAGG CGGAGGCGGT GGGCCCCGCA AGCACTTCTT 
    CCCCCGGCCC AAGGCCGCCG CCCCACGCAA CACCACCTCC TTCATCATCC 
    GTGCCAAGCG CGCCGGTGGC ATCGCCTCCC TCGTCTCCCC CTCCCCTGTT 
    ACCCCCGCCG TTCTCCCCAC CCCACGCCTC TCCCCCTCCC GCGAGGGCCT 
    CTCCGACATG GCTCAGGCGC AGTGGGGCGT CGATGGCTAT GGCTCCATGA 
    AGGGCCTCAT CCGCCTCCGC ACCTCCCCTC ACCCCGCCAA CCCCTCCGAT 
    GACGACGATG ATGCCAACTC CAGCGGCAGT GACGTCGAGG AGCATGTCGA 
    GGTGGAGCGC CGCCTCGACC ACGATCTCAG CAGGTTTGAG ATGGTCTACC 
    CTGCCAGGGG TGACGGTGTC TTCTTCGAGG AGGAGGATGA CTATGAGTAT 
    GACCAGGAAG CCCATGTGGC TCGCCTCGAG GAGGAGAACC TCACCTTGAA 
    GGAGAGGCTC TTTTTGATGG AGCAGGAGCT TGGCGACATG AGGCGCCGCC 
    TGGAGGCACT CGAGTCGCGT TTTGCAGGGA CTGATGGTAT GCCTATTGAG 
    AATTCAGATG CAGTTGCAGT TGACCATGAC AAGGAGATGG CTCATCCCAT 
    ACTTGTTCAG AGGGATGATC TTAGGACTGA GATTGCTGCT GATGCAGCAG 
    GGTCAGACAA GGCTAGTGCA CAAGACAATG CAGAGGAGGT TGCTGATGCA 
    GCAGTGTCAG AGAAGATCGT GCAAGACAAT GCAGATGTTG TAGTTGCAGG 
    GTCAGAGAGG ACTGGCGAAG AGATCGGGGT TGATGCTTCG GAGATGGATT 
    GATGGGAGAT GGACACTGGA ATGCAATAGC GGTTATCAGT ACTGTACATA 
    CATAATTGTC GATGACAGAT TGAGGCCGCG TGATGTGGAC TTGTTTTGGG 
    AGGCTTACAA TTGTATGTTG TCGCATAACA AGTGGATCAT CGTATTTACA 
    ATGTAATATG TTTCTACC

    Gene models with high sequence identity

    1. AT5G19900.1 [+] show detail - PRLI-interacting factor, putative
      E-value: 1e-60; Score: 230.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G19900.1

    Model type
    Protein coding
    Short Description
    PRLI-interacting factor, putative
    Computational Description
    PRLI-interacting factor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR