K36211

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36211

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36211

Determination of introduced cDNA(s)

  • J013062H23 - Rice Full-length cDNAs - Original: J013062H23

    full reading [+] show sequence

    Nucleotide sequence: J013062H23 - full reading 
    GATCAGACCT GCAGAGGCAA TAATCCATCC ATGGCAACTA TCATTCCAGT 
    ACTCCTGCGG CTGCTGCTCC TGCTGCTCCC GCTTCCCCTG ATCCGAGACC 
    ACCTCTGGGC GCCGAGCCAC CTCCGGCCAA CGCCGCAGGA CGATGCGGGT 
    GAGCTCCACC CGATCTTCCT GGTGCCCGGG GCGACCTGCA GCAACGTGGA 
    GGCGCGGCTC ACCGAGGCGT ACCGGCCGTC GGCGGCGCAC TGCGGCGCGA 
    TGAAGGGGAA GGGATGGTTC GGGCTGTGGG AGAACAACAC GGAGCTGCAG 
    GCCCACGACT ACGCGGAGTG CTTCCAGGAG CAGATGGCCC TGGTCTACGA 
    CCCCGCCGCC AACGAGTACC GGAACCTGCC CGGCGTCGAC ACCCGGGTGC 
    CCAACTTCGG CTCCGTACGG TCGTTTGGCA GCAAGGACGT TTTTAACCCA 
    GAATGGTGCC TTGCGAGTCT TATAGGGGCG CTGGAGGAGA TGGGATACCG 
    TGACGGAGAC AACATGTACG GAGTTCCTTA CGATATCCGT TACGCTCCTC 
    CAATCCCTGG CCAGGCGTCC CAAGTCTACT CGCGCCACTT CAGGGAGTTC 
    ATGGAGCTCG TGGAGACAGC AAGCGAGAAG CAGCATCACA ACAAGAAGGC 
    CATCATCCTC GGGCATAGCC TCGGTGGAAT GGTGGCGCTA GAGTTCGTCA 
    GGAACACACC GTCGGCGTGG CGAGACAAGT ACATTGAGCA TCTCTTCCTC 
    GTCGCACCTA CGCTCTCCAC GGGGTTCGTG CCCACCGTGA GGAACCTCGT 
    CTCCGGGCCG AAAGATCTCC TCCACGTCGC GAACACGACG GCCTTGTCTC 
    TGAGGCCAAT GTGGAGGAGC TTCGAGACGA GCATTGTCAA TGTTCCATCT 
    CCCGAGGTGT TTGGGCACGA GCCGATCGTG GTCACTAAGC GGAGGAACTA 
    CTCCGCGTAC GATCTGGAAG ATCTCCTCGC CGCCATTGGT TTCAGCGATG 
    GCATCGAGCC TTTCAGGAGA CGGACGATCG CACGGATGAA CTACATCGAG 
    GCGCCCATGG TGCCGCTGAC GTGCATCAAT GCAGTGGGGA AGAGGACACC 
    ACGGCAATTC GTATACTGGG ATGGTAACTT CGACGATGAA CCGACAGAAA 
    TAGTGTATGG TGACGGAGAT GATTCCATCA ACCTGGTTAG CATGTTGGCG 
    TTCGACGAGG AAATGCGTCG GCAGCCCGGA CAGAAGGGGC GATTCAAGTC 
    GATCAAGCTC AATAATGCTT CTCATGGTTC AATTCTTACG GATGAATGGG 
    CACTAAGGAG GGTCATGCAA GAGATCTTCT TGAAGTGAAT TGGAATTCTT 
    CGTAGGCTCT TGTGGCC

    Gene models with high sequence identity

    1. AT1G27480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 8e-62; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE-RE 1e-40
    HMMPanther Lecithin:cholesterol acyltransferase 1e-40
    superfamily alpha/beta-Hydrolases 5.6e-14
    HMMPfam Lecithin:cholesterol acyltransferase 4.4e-27

    See the detailed result >

    AT1G27480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); Has 1076 Blast hits to 1070 proteins in 248 species: Archae - 0; Bacteria - 41; Metazoa - 667; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR