K36216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36216

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36216

Determination of introduced cDNA(s)

  • J023084F15 - Rice Full-length cDNAs - Original: J023084F15

    full reading [+] show sequence

    Nucleotide sequence: J023084F15 - full reading 
    TGGCCATCCC CGTGCCACCC ACCCCTCCGC CGGGGGCCGC CGCCGCCGCC 
    GTCGACGCAC GGCCGACGTG CTCGGCGCAG AACCAAGCAG ACGGCGAGCC 
    AAACTTTTCT TGCCCTTTTG CTCTTGCAGA GTGGAGCAGA GGACACTTGC 
    ATCTTGACGA ATTTTCTCAA GTCGATGGGT TGCTGTGGCA GCAGCACTGT 
    AGACGCCGAG GAGCACCTGG ACTACAGTGG CGGAAATGTG ACTTTGGTAA 
    CTGATCAAAA GAATTGGGAC AATACAATGG AAGAAGTAGC TGAGCATGGC 
    AAAACAGTTG TGCTAAAATT CAGTGCAATT TGGTGCACTC CGTGTAGGAA 
    TGCTGCCCCT CTATTCGCTG AACTTTCACT GAAGTATCCT GACATTGTTT 
    TCGTGTCCGT GGATGTAGAC GAAATGCCGG AGCTGGTGAC GCAATACGAT 
    GTGCGTGCAA CCCCAACGTT CATCTTCATG AAAAACAATG AGGAGATTGA 
    TAAGCTTGTT GGAGGCAACC ATGAAGATCT TCAGGAAAAG TTCGAACAGC 
    TTAACCGGCC AAAGTTATAT GATGATGTAT AAGCATTTTT TTTTGGTTTG 
    CTGTCTAATT AAGAAATTGG TGAGCCAAAT CAGTAGAATG AGCTCTCTGT 
    CGAATCAAAG TACTGGATTG GCTGAAGAAA CAGTTCAGAA ATCTACATAG 
    GTTGCAAGAA GCTGACCAAC AGAAGTAGGG ATTTCTCAGT AGAGTTCAGT 
    CCGAATACGG GCAGTAATTA AGTTAAGTTA GCTAGTGTCT GCAAACTCTG 
    CACCGCACTG TTCAAAGTGA TTAACCTCAT ACAAAACAAT GTAATTATAT 
    ATTACC

    Gene models with high sequence identity

    1. AT3G08710.2 [+] show detail - thioredoxin H-type 9
      E-value: 5e-29; Score: 125.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 1.6e-30
    HMMPanther THIOREDOXIN H-TYPE-RELATED 8.1e-38
    HMMPanther Thioredoxin, core 8.1e-38
    Gene3D Thioredoxin fold 2.8e-29
    ProfileScan Thioredoxin-like 12.244
    HMMPfam Thioredoxin domain 7.2e-25

    See the detailed result >

    AT3G08710.2

    Model type
    Protein coding
    Short Description
    thioredoxin H-type 9
    Curator Summary
    Associated to plasma membrane. Moves cell to cell, suggesting a role in intercellular communication.
    Computational Description
    thioredoxin H-type 9 (TH9); INVOLVED IN: cell communication; LOCATED IN: cytosol, nucleus, plasma membrane, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G56420.1); Has 16223 Blast hits to 16135 proteins in 2903 species: Archae - 224; Bacteria - 9339; Metazoa - 1540; Fungi - 676; Plants - 1413; Viruses - 3; Other Eukaryotes - 3028 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR