K36221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36221

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36221

Determination of introduced cDNA(s)

  • J013132H24 - Rice Full-length cDNAs - Original: J013132H24

    full reading [+] show sequence

    Nucleotide sequence: J013132H24 - full reading 
    GATGCTCCGC CGCAGCCGCC ACTTCCTCCC ACCCAGACCC CGCCGCCGGC 
    CGAGACCTCG CCGCGAGGCC CCCGCCGCCG AGCCGCCCAC CCCGACCTAC 
    ACCCGCGACG TCGTCCGCCG CGTCGACGCC ATCCTCCGCG GCCACCCCTG 
    GTCGGCGGCG CGGCCGCTCC TCCTCTCCCT CCCGGGCCTC GCCTGGGACT 
    CCCACACCGT CGCGCGCGTC CTCAAGGCGC ACCCGCCTCT CCACAAGGCC 
    TTCCTCTTCT TCCGCCTCGC CGCCGGCGCA GGCGGCGGGT TCCGCCACGA 
    CCGCTTCACC TACACCTCCA TGCTCCACCT CCTCGGCGAG GCCGGCCGCG 
    TGCCGGCCAT GATGCGCCTC CTCGCCGAGA TGCTCCGCGC GGGGGTGGAC 
    CCCGACGCCG CCACCTTCAC CACGGTCATG CACTGGCTGG CGCACGCCGG 
    GGACGTCGAC GCCGCGATGC GGGTGTGGGA GGAGATGCGC GCGCGGAAGG 
    GGAAGTGTCG GCCCACCCTC GTGAGCTACA CGGCGTGCGT GAAGATCCTG 
    TTCGACGCCG GGAGGCCTGC GGAGGCCAGG GAGGTGTTCC AGGAGATGGT 
    GGCCGAGGGA CTGCGGCCCA GCTGCAAGAC GTACACGGTG CTCATCGAGC 
    ATCTCGCGAA CGTAGGGAAA TTTGAAGCTA CTATGGAAAT TATGGACAAG 
    ATGCAAGAAG CTGGTGTAGA ACCAGATAAA GCACTCTGTA ATATTCTAGT 
    TCAGAAATGC TCCAGGGCTG GTGAGACATC AGTGATGACC CGAATTCTTC 
    AATACATGAA GGAAAATTTC ATCGTGCTTC GCCGACCTAT ATTTTTGGAA 
    GCACTTGAAG CTCTAAAAGC TAATGGTGAG AGTGACAATC TTCTTCGGGA 
    AGTGAATCCG CATCTTGCAT TTGAAGGCAT CGAATGTGAC CCAGCATTTA 
    CTGATCTAGG CTACATTACT GTCAGGAGTA CGATCCTGTA CCTTTTGGCT 
    TCTAGAAACT GGTCCGCCGT AGAACACATG ATAAATGAAA TGACCCCCAA 
    GAATATCAAG GTTGAATCAC ATATCCTCTC TGACATTATT CAAGCAAGCT 
    GTGCAAACTG CAGACCATCA TGTGGGCTTG CAGTTCTGCG TTACAGTCTA 
    AGAATAGGCA ATGAACTTGA TAGATCTGCA TATGGCAGCC TTCTTGGTCA 
    TTACATCAGA AATGGTTCAT TCGATTTGGT GTTTGAGATC GTTGAAATAT 
    TGATTAAATC TGGCTGCAAT CTTGGGACAT ATCTATCATC TATATTAATA 
    ATAAAACTGG CTTGTGCTGG GCATTCTTCA ACCGCAGTGC GCATTTTTGG 
    ATTATTGACT ACAGACAAGA ATGTTGTTAC GTACACTGCC CTTATGAGTG 
    CCTATTTTCA AGATGGGAAA GTTGATAAGG CTCTCCAACT ATTCTTGCAA 
    ATGAGTGCTA ATGGAGTATC TGCATGCCCA GGTACATATG AAGTACTGAT 
    ACATGGATTA CAAATGGCTG GGCGGAAACA GGAATCTGAA CATTACCGAA 
    GAGAGAGAAT GGAGATGCAA TGGCATCTTC AGTATCGCAA TGAGCATTCC 
    CCTGAAGATA GCTTATGTAA CCATCTGTTT TGTGATTTTC ATGGTTAGAA 
    GATGGTCCAA AATCTTCATC TTTCATTAGC TGAATCCTTC CAGCACCTAT 
    TGCTGCCTGA ACATGATGAT ATTGACACAC AGTAACTCAT AATGAGGTCT 
    GGACCGTTCA TTCGGTACAC AAAATCAAGT ACTGGCTACA TACTATCCAC 
    CAGTTTTTGT GCTTTTGAGA GCATATTATT GATGAATTAC TGCATTGTAG 
    ATGAATATGT CAAGATGTCA TTAAATTATG GAGTCCATCT AGGATCACCA 
    TTATGTAACA CAAATGCTCT TTCTGAGCAT CTTCACGAGC ATGACTGCAC 
    AAGCTGCTAC ACGGGCTGTT CACTTTTCCA TTTCAATGTA TTGCTGTTGT 
    CATTCATCAG TAGACAACTT CTAAAGGTGC ACATGGTGAA GACTAGTGCT 
    GCCACTTTTA TCAAACCTTT ACTCAGCAGC CCCTATACAA ACTCTCTATT 
    GCTCTTGGCT GCTATTGCAA AAAGGTTTCA CC

    Gene models with high sequence identity

    1. AT2G01390.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 2e-107; Score: 387.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF48452 6.1e-14
    HMMPanther PTHR10483 2.10000267834025e-84
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    ProfileScan Pentatricopeptide repeat 0
    HMMPfam Pentatricopeptide repeat 0.43
    HMMPfam Pentatricopeptide repeat 0.077
    HMMPfam Pentatricopeptide repeat 0.28
    HMMPfam Pentatricopeptide repeat 2.4
    HMMPfam Pentatricopeptide repeat 220
    HMMPfam Pentatricopeptide repeat 3.60000000000001e-05
    HMMTigr Pentatricopeptide repeat 0.000640000038788486
    HMMTigr Pentatricopeptide repeat 0.0180000001062787
    HMMTigr Pentatricopeptide repeat 0.000500000086445935
    HMMTigr Pentatricopeptide repeat 0.000719999952919342
    HMMTigr Pentatricopeptide repeat 850.000225010471
    HMMTigr Pentatricopeptide repeat 98.999990258429
    HMMTigr Pentatricopeptide repeat 0.0119999985703101

    See the detailed result >

    AT2G01390.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR