K36227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36227

Determination of introduced cDNA(s)

J023004G17 - Rice Full-length cDNAs - Original: J023004G17

full reading [+] show sequence

GGTGCCCAGA GAGCTCGACA CAAATACAGG GGGACTCGTC TTCTTCCCCG 
AGCTTTGCGA GCAGAGTCGT TCAGCCATGG CGCGGCAGGA GCAGCAGCAG 
CACCTGCAGG TGCTGAGCGC GCTGGACGCG GCGAAGACGC AGTGGTACCA 
CTTCACGGCG ATCGTCGTCG CCGGCATGGG CTTCTTCACC GACGCCTACG 
ACCTCTTCTG CATCTCCCTC GTCACCAAGC TGCTCGGCCG CATCTACTAC 
ACCGACCTCG CCAAGGAGAA CCCCGGCAGC CTGCCGCCCA ACGTCGCCGC 
GGCGGTGAAC GGAGTCGCGT TCTGCGGCAC GCTGACGGGG CAGCTCTTCT 
TCGGGTGGCT CGGCGACAAG CTCGGCCGGA AGAGCGTGTA CGGGATGACG 
CTGCTGATGA TGGTCATCTG CTCCATCGCG TCGGGGCTCT CGTTCTCGCA 
CACGCCCACC AGCGTCATGG CGACGCTCTG CTTCTTCCGG TTCTGGCTCG 
GATTCGGCAT CGGCGGCGAC TACCCGCTGT CGGCGACGAT CATGTCGGAG 
TACGCCAACA AGAAGACCCG CGGCGCGTTC ATCGCCGCCG TGTTCGCGAT 
GCAGGGGTTC GGCATCCTCG CCGGCGGCAT CGTCACCCTC ATCATCTCCT 
CCGCGTTCCG CGCCGGGTTC CCGGCGCCGG CGTACCAGGA CGACCGCGCG 
GGCTCCACCG TCCGCCAGGC CGACTACGTG TGGCGGATCA TCCTCATGCT 
CGGCGCCATG CCGGCGCTGC TCACCTACTA CTGGCGGATG AAGATGCCGG 
AGACGGCGCG CTACACCGCC CTCGTCGCCA AGAACGCCAA GCAGGCCGCC 
GCCGACATGT CCAAGGTGCT CCAGGTCGAG ATCCAGGAGG AGCAGGACAA 
GCTGGAGCAG ATGGTGACCC GGAACAGCAG CAGCTTCGGC CTCTTCTCCC 
GCCAGTTCGC GCGCCGCCAC GGCCTCCACC TCGTCGGCAC CGCCACGACA 
TGGTTCCTCC TCGACATCGC CTTCTACAGC CAGAACCTGT TCCAGAAGGA 
CATCTTCACC AGCATCAACT GGATCCCCAA GGCCAAGACC ATGTCGGCGC 
TGGAGGAGGT GTTCCGCATC GCGCGCGCCC AGACGCTCAT CGCCCTGTGC 
GGCACCGTCC CGGGCTACTG GTTCACCGTC TTCCTCATCG ACATCGTCGG 
CCGCTTCGCC ATCCAGCTGC TAGGGTTTTT CATGATGACC GTGTTCATGC 
TCGGCCTCGC CGTGCCGTAC CACCACTGGA CGACGAAGGG GAACCACATC 
GGCTTCGTCG TCATGTACGC CTTCACCTTC TTCTTCGCCA ACTTCGGCCC 
CAACTCCACC ACCTTCATCG TGCCGGCGGA GATCTTCCCG GCGAGGCTGC 
GTTCCACCTG CCACGGCATC TCGGCGGCGG CGGGGAAGGC CGGCGCCATC 
ATCGGATCGT TCGGGTTCCT GTACGCGGCG CAGGACCCGC ACAAGCCCGA 
CGCCGGGTAC AAACCCGGGA TCGGGGTGAG GAACTCGCTG TTCGTGCTCG 
CCGGATGCAA CCTGCTCGGG TTCATCTGCA CGTTCCTCGT GCCGGAGTCG 
AAGGGGAAGT CGCTGGAGGA GATGTCCGGC GAGGCGGAGG ACGACGACGA 
CGAGGTGGCC GCCGCCGGCG GTGGCGCCGC CGTGCGGCCG CAGACGGCGT 
AGTGTATGAC TGCACGTGAA TATAGTGTTG ATGTGATGGA AAAGGACTGA 
AGTTTGGATC TAAACACAGC CTATGAAGTC TAAAGTTATT GGTTCAAATT 
TTGCTGAAAG TTCTGTTTTT CTTCACAAAA AGTAGCTTTA AAGTTGGAAA 
TGGACTAACT GTGGAGAATA TATGTGAACC AGATATGAAA AATTGACTTG 
CACTATGATC TGAGTACGAA GTCGAAATTG AGTATATTTG ACTATGAACT 
CCATACTTAG GCCACGTTTG GGGGCCCACA GTACCTAGGT GACAAAAACG 
AAATACAACA AATTTCGACG AAATTTCTGA CCAAAGGAGG CCTGCATTGA 
TGCCGATGGC TCAATAAAGC AGCAGTTGAA TTGTTGGACA GCGTATTTTT 
CTGACAAATA TCCGGCAAGT CTGAAGTTCA GGATAAATAG CCAGGCAGGG 
AAGAAGCGTG TTCACTGAAT TTTGCAAAAT TTCTTCAGTC ATTCTTGTTG 
ACGCGGCAAA CCCCAATTTA AGCCAAAGTT TGGTAACCTT TTTTTGAGTG 
TTTGGCTGTT AATTTGGGGA AGTGTAAGTT TGTTTGAACA GTAAGTGAGT 
ATGAAAACAT TTATTTTAGC C

Gene models with high sequence identity

AT2G38940.1 [+] show detail - phosphate transporter 1;4
E-value: 0; Score: 746.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	INORGANIC PHOSPHATE TRANSPORTER	9.3e-252
HMMPanther	SUGAR TRANSPORTER	9.3e-252
superfamily	Major facilitator superfamily, general substrate transporter	1.8e-64
ProfileScan	MFS	31.901
HMMTigr	Phosphate permease	0
HMMPfam	General substrate transporter	1.2e-50
Coil	coiled-coil	0

See the detailed result >

AT2G38940.1

Model type: Protein coding
Short Description: phosphate transporter 1;4
Curator Summary: Encodes Pht1;4, a member of the Pht1 family of phosphate transporters which include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).
Computational Description: phosphate transporter 1;4 (PHT1;4); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, inorganic phosphate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, phosphate transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 1;7 (TAIR:AT3G54700.1); Has 27225 Blast hits to 27133 proteins in 2002 species: Archae - 605; Bacteria - 19470; Metazoa - 1461; Fungi - 3457; Plants - 1450; Viruses - 2; Other Eukaryotes - 780 (source: NCBI BLink).
Link: InterPro Scan - TAIR