K36302

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36302

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36302

Determination of introduced cDNA(s)

  • J023019G15 - Rice Full-length cDNAs - Original: J023019G15

    full reading [+] show sequence

    Nucleotide sequence: J023019G15 - full reading 
    GGCAGGCACC CACAGAACTT TCGTTGCCGA CTGCGGCTGC AACCGGAATG 
    TAGCCGGCCT GTGTGCTACT TCCAGCCACA AGCAGAGGCC GCGACATTAA 
    TCTCACAGGA AATCTAGTCG TCTAGTAACT CTACTGCCAA ATCTTGATAT 
    CTTGAAAGCT TTCAATTCAG CTTGCAATAT ATCAATACCT GTTCCCCTTT 
    CCTAATTCCT ACCCTTCCTC CTCGTGCTAC AGCCCTGCCG TTTTTTGGGA 
    TGATGATGAT GGTGAGATTG CCTGCTATGT TCGTGATCTG CATCTTGGCT 
    GTTCCGCTGC TGCCAGCGCT CGGCTCGGAG CCGCCGTCGA CACCGGTGCC 
    GACCGTTGGC GTGACGGCGG CGAGCGACCT CGTCGGCTCC GGTGGCCACA 
    GCTACTTGGA CGTCAGGACA GAAGAGGAAT TCAAGAAGGG ACATGTGGAG 
    AATTCTCTTA ATGTGCCATT CCTCTTCTTT ACCCCTCAAG GGAAGGAAAA 
    GAACACAAAG TTCATAGAGC AGGTGGCATT GCATTATGAT AAGGAGGACA 
    ACATAATTGT GGGTTGCCTA AGTGGAGTAA GATCTGAACT AGCATCTGCC 
    GATCTCATAG CAGCCGTAAG ACCTCTCCCC CCTTGAGCGC TCCTGTTGTT 
    TCTAAATCTG ATTTATATAT TTTAACTTAG GACTTTGATA TTCATAAAAT 
    TTTGTAGTAA CTTTTTTTAG ATAATGGGAA ATTGTTAGAG CAAGTAAGTA 
    CGATACTTTT TCTCCTGTGT CCCTCAATTT AAGTAGGTTA AACATTGTCT 
    GACGGGTGAA AGACTTGAAT AGGTGAACAT AGCATTGAAT TTGGTGGATA 
    ATAATAGTGT TTTATATGCA TGAAAAAGAT AGAATTTGTA TGTCAGGCGA 
    TTTGCCTAAT GCAATCCTAA TTTTACTCCT AAAATTACAT TTGAGCAATT 
    TGTGTACTGA ATATTAGAAT TTTGCTCCCA ACTAAACTTT AATTCCGGTA 
    TTGTTCTTAT TTTGTTATGT ACAGGTTCTT GGATACTGTG ACTGTGACCA 
    TCGTACAATC AAATCGATAT AAAAACACTA ATGTTAATAG TAAATTAGAA 
    TTGAACGAAA TGCACGCGAA GTTAGCGTAG GCCATGAGAG ATGGATTGTG 
    GTTTCTCACA TAATAAAGAG TTAATTTAAT CCATGCCATT ATAATCAGCA 
    GCACCTCTTA AACAGTTTGG TAAAGGAATA AGTTCATTTT ACACCCAGCT 
    TTAAAATGGC TTATTTAACA TATTTGTGTT ATGTAGTACT CCCTCTGATC 
    AAGATTACAT GACGTTTCCG ACAGCCAAAA CCTATTAAGC GCAATTCATT 
    TTGTTTGTTC AAAGCATCAA ATAATATCGT CCGGAGGTAG TACTATGACA 
    AACATACCTT GGAGAAAATT TCCTACTTGT ATTAATAAAG GAGGAACTTG 
    AGTGTGTATT TACAAGGTAT GCCCAGGACA CGTGCACAAA AATACTGTTC 
    TCACAAAGTC TGCTTCTTGG TCGCTGCCAC TACTCTCTCT GTGATATCCA 
    CATTTTTTTT CTGAAAGAAT AAATTAGGGT GCACATAAGC TTTCATATTT 
    AACAGTCCCC TTTTTCAGAT TCAGTATCTC GATCATTCCC TTGTTAGTTT 
    CCTTTGTTTA TGTCTCAAAC ATTTGATATG GAAACAGGGA TTCAAAAATG 
    TAAAGAACAT GGAAGGAGGT TACATGGCAT GGGTGGAAAA TGGCCTTGCG 
    GTGAATAAAC CTCTAGTGCA AGAAGAGCTC TAGTTTCAGT TATTGTATTT 
    TTAGATAATG ACTTTCAGTT ATTGTATGAC TGGGTGTTAA TTTGATTTGT 
    AGAAAGGAAA GGTATAAGAA AACAATGTTA TATTATTCCC C

    Gene models with high sequence identity

    1. AT5G66040.1 [+] show detail - sulfurtransferase protein 16
      E-value: 2e-14; Score: 78.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rhodanese-like 2e-10
    superfamily Rhodanese-like 5.9e-14
    ProfileScan Rhodanese-like 11.418
    Gene3D Rhodanese-like 3e-15

    See the detailed result >

    AT5G66040.1

    Model type
    Protein coding
    Short Description
    sulfurtransferase protein 16
    Curator Summary
    Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
    Computational Description
    sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR