K36323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36323

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36323

Determination of introduced cDNA(s)

  • J013047L01 - Rice Full-length cDNAs - Original: J013047L01

    full reading [+] show sequence

    Nucleotide sequence: J013047L01 - full reading 
    GAATCTCTCT CCTCTCTCTC TCTCTCCAGC TCGCCTCCCC CTCGCCGGCG 
    ACGAGCTCTC CCCCGGCTAG GGTTAGACCA GGTGCCCCTC TTGTCTGCGG 
    CGGAGGAGGT GGGAGGAAGG ATGGAGGAGT CCGTGGGCTC GCGCGGCGGC 
    GGCGGCGGCG GCCTGGACGC CCAGATCGAG CAGCTCATGG AGTGCCGCCC 
    GCTCTCCGAG CCCGAGGTCA AGACGTTGTG CGAGAAGGCG AAGGAGATAT 
    TGATGGAAGA AAGCAACGTT CAGCCAGTTA AGAGCCCAGT CACAATTTGT 
    GGTGATATCC ATGGGCAATT CCATGATCTA GTAGAGCTCT TTCGGATTGG 
    TGGGAAGTGT CCAGATACAA ATTATTTGTT TATGGGAGAT TATGTAGATC 
    GTGGCTACTA TTCTGTTGAG ACTGTTACAC TTTTGGTTGC ACTGAAGGTG 
    CGCTACCCAC AGCGGATTAC AATCCTTCGT GGAAACCATG AGAGTCGGCA 
    GATCACACAG GTGTATGGAT TCTACGACGA ATGCCTACGA AAGTATGGAA 
    GTGCAAATGT CTGGAAGATC TTCACCGATC TTTTTGACTA TTTTCCATTG 
    ACAGCATTGG TTGAATCAGA GATTTTCTGC CTCCATGGTG GTTTATCGCC 
    ATCAATCGAC AATCTTGATA GTGTTCGCAG CTTAGATCGT GTTCAAGAGG 
    TCCCTCATGA GGGACCAATG TGTGATCTTC TATGGTCTGA CCCGGATGAT 
    CGATGCGGTT GGGGCATATC TCCTCGTGGT GCTGGCTACA CTTTTGGCCA 
    GGACATATCG GAGCAGTTTA ACCATACCAA TAATCTCAAA CTTGTAGCCC 
    GGGCTCATCA ATTAGTTATG GAAGGATATA ACTGGGCGCA CGAACAAAAG 
    GTCGTGACCA TATTCAGTGC ACCTAATTAT TGTTATCGCT GTGGCAACAT 
    GGCATCCATC CTGGAGGTTG ATGACTGCAG GAATCACACA TTTATTCAGT 
    TTGAACCAGC TCCTAGGAGA GGTGAACCAG ATGTGACACG GAGAACACCT 
    GATTATTTCC TTTAAATTAT CTGTTGTAAT TTGTATTGTT TTGTTTCTTT 
    TGTTTCTCTA AGACCGCAAT AGTGAGTGCT GGTCAGTAAA ATTTTGTTGG 
    ATCCCTTTGG TAACTAAACT GGCCAGCGAT AGCATGAGAA TGCCGATGCC 
    CAAAAAAAAT GTGAAACTTA TGCCCCCC

    Gene models with high sequence identity

    1. AT3G58500.1 [+] show detail - protein phosphatase 2A-4
      E-value: 1e-172; Score: 602.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Metallo-dependent phosphatases 6.3e-127
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.5e-162
    Gene3D no description 2.1e-125
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.7e-91
    HMMPfam Metallophosphoesterase 3.3e-41
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 5.1e-265
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 5.1e-265

    See the detailed result >

    AT3G58500.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-4
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1); Has 6816 Blast hits to 6628 proteins in 481 species: Archae - 80; Bacteria - 203; Metazoa - 2402; Fungi - 1409; Plants - 984; Viruses - 3; Other Eukaryotes - 1735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR